LOCUS VTR92679.1 520 aa PRT BCT 03-FEB-2020 DEFINITION Gemmata massiliana rna polymerase alpha subunit domain protein : DNA-directed RNA polymerase subunit alpha (Fragment) OS=uncultured planctomycete GN=HGMM_F13D05C26 PE=4 SV= 1: TPR_11: TPR_2: RNA_pol_A_CTD: RNA_pol_A_CTD protein. ACCESSION LR593886-1980 PROTEIN_ID VTR92679.1 SOURCE Gemmata massiliana ORGANISM Gemmata massiliana Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae; Gemmata. REFERENCE 1 AUTHORS CONSRTM Science for Life Laboratories JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution, Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden FEATURES Qualifiers source /organism="Gemmata massiliana" /chromosome="1" /isolate="Soil9" /mol_type="genomic DNA" /isolation_source="soil" /db_xref="taxon:1210884" protein /locus_tag="SOIL9_50350" /note="BLAST_uniprot:hit_1 ; ACCESSION=tr|H5SDG8|H5SDG8_9BACT ; ALN/Q_length_ratio=0.806 ; DESCRIPTION=DNA-directed RNA polymerase subunit alpha (Fragment) OS=uncultured planctomycete GN=HGMM_F13D05C26 PE=4 SV=1 ; EVALUE=1e-135 ; Q/S_length_ratio=1.221" /note="BLAST_uniprot:hit_2 ; ACCESSION=tr|L0DLP5|L0DLP5_SINAD ; ALN/Q_length_ratio=0.840 ; DESCRIPTION=DNA-directed RNA polymerase, alpha subunit/40 kD subunit OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_5630 PE=4 SV=1 ; EVALUE=1e-118 ; Q/S_length_ratio=1.171" /note="BLAST_uniprot:hit_3 ; ACCESSION=tr|E8R0B5|E8R0B5_ISOPI ; ALN/Q_length_ratio=0.837 ; DESCRIPTION=RNA polymerase alpha subunit domain protein OS=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) GN=Isop_1658 PE=4 SV=1 ; EVALUE=1e-113 ; Q/S_length_ratio=1.161" /note="BLAST_uniprot:hit_4 ; ACCESSION=tr|F0SQH8|F0SQH8_PLABD ; ALN/Q_length_ratio=0.827 ; DESCRIPTION=RNA polymerase alpha subunit domain protein OS=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) GN=Plabr_0324 PE=4 SV=1 ; EVALUE=1e-107 ; Q/S_length_ratio=1.193" /note="BLAST_uniprot:hit_5 ; ACCESSION=tr|A3ZPX9|A3ZPX9_9PLAN ; ALN/Q_length_ratio=0.760 ; DESCRIPTION=Probable DNA-directed RNA polymerase alpha chain OS=Blastopirellula marina DSM 3645 GN=DSM3645_22711 PE=4 SV=1 ; EVALUE=1e-104 ; Q/S_length_ratio=1.143" /note="BLAST_uniprot:hit_6 ; ACCESSION=tr|A6BZY7|A6BZY7_9PLAN ; ALN/Q_length_ratio=0.783 ; DESCRIPTION=Probable DNA-directed RNA polymerase alpha chain OS=Planctomyces maris DSM 8797 GN=PM8797T_22163 PE=4 SV=1 ; EVALUE=1e-101 ; Q/S_length_ratio=1.253" /note="BLAST_uniprot:hit_7 ; ACCESSION=tr|D5SQY2|D5SQY2_PLAL2 ; ALN/Q_length_ratio=0.856 ; DESCRIPTION=RNA polymerase alpha subunit domain protein OS=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=Plim_0602 PE=4 SV=1 ; EVALUE=1e-100 ; Q/S_length_ratio=1.153" /note="BLAST_uniprot:hit_8 ; ACCESSION=tr|H5SDM2|H5SDM2_9BACT ; ALN/Q_length_ratio=0.840 ; DESCRIPTION=DNA-directed RNA polymerase subunit alpha OS=uncultured planctomycete GN=HGMM_F14B06C02 PE=4 SV=1 ; EVALUE=1e-100 ; Q/S_length_ratio=1.182" /note="BLAST_uniprot:hit_12 ; ACCESSION=tr|M2AW92|M2AW92_9PLAN ; ALN/Q_length_ratio=0.848 ; DESCRIPTION=RNA polymerase alpha subunit domain protein OS=Rhodopirellula europaea 6C GN=RE6C_02360 PE=4 SV=1 ; EVALUE=1e-99 ; Q/S_length_ratio=1.174" /note="BLAST_uniprot:hit_10 ; ACCESSION=tr|K5DGY0|K5DGY0_RHOBT ; ALN/Q_length_ratio=0.848 ; DESCRIPTION=RNA polymerase alpha subunit domain protein OS=Rhodopirellula baltica SH28 GN=RBSH_03019 PE=4 SV=1 ; EVALUE=1e-99 ; Q/S_length_ratio=1.174" /note="BLAST_uniprot:hit_9 ; ACCESSION=tr|L7CMU9|L7CMU9_RHOBT ; ALN/Q_length_ratio=0.848 ; DESCRIPTION=RNA polymerase alpha subunit domain protein OS=Rhodopirellula baltica SWK14 GN=RBSWK_00778 PE=4 SV=1 ; EVALUE=1e-99 ; Q/S_length_ratio=1.174" /note="BLAST_uniprot:hit_11 ; ACCESSION=tr|M5SF99|M5SF99_9PLAN ; ALN/Q_length_ratio=0.848 ; DESCRIPTION=RNA polymerase alpha subunit domain protein OS=Rhodopirellula europaea SH398 GN=RESH_04585 PE=4 SV=1 ; EVALUE=1e-99 ; Q/S_length_ratio=1.174" /note="BLAST_uniprot:hit_14 ; ACCESSION=tr|F2AX99|F2AX99_RHOBT ; ALN/Q_length_ratio=0.881 ; DESCRIPTION=RNA polymerase alpha subunit domain protein OS=Rhodopirellula baltica WH47 GN=RBWH47_05135 PE=4 SV=1 ; EVALUE=4e-99 ; Q/S_length_ratio=1.040" /note="BLAST_uniprot:hit_13 ; ACCESSION=tr|Q7UWL0|Q7UWL0_RHOBA ; ALN/Q_length_ratio=0.881 ; DESCRIPTION=Probable DNA-directed RNA polymerase alpha chain OS=Rhodopirellula baltica (strain SH1) GN=rpoA PE=4 SV=1 ; EVALUE=4e-99 ; Q/S_length_ratio=1.040" /note="BLAST_uniprot:hit_15 ; ACCESSION=tr|M5RFV7|M5RFV7_9PLAN ; ALN/Q_length_ratio=0.848 ; DESCRIPTION=RNA polymerase subunit alpha domain-containing protein OS=Rhodopirellula maiorica SM1 GN=RMSM_04807 PE=4 SV=1 ; EVALUE=1e-97 ; Q/S_length_ratio=1.174" /note="Pfam_scan:hit_1 (231..298); Pfam:PF13414.1:TPR_11; Pfam_type:Repeat;HMM_aln_Length:68; HMM_Length:69; EVALUE:6.3e-12; BITSCORE: 44.9" /note="Pfam_scan:hit_2 (302..334); Pfam:PF07719.12:TPR_2; Pfam_type:Repeat;HMM_aln_Length:31; HMM_Length:34; EVALUE:9.7e-06; BITSCORE: 25.1" /note="Pfam_scan:hit_3 (356..423); Pfam:PF03118.10:RNA_pol_A_CTD; Pfam_type:Domain;HMM_aln_Length:58; HMM_Length:67; EVALUE:1.2e-22; BITSCORE: 79.0" /note="Pfam_scan:hit_4 (445..512); Pfam:PF03118.10:RNA_pol_A_CTD; Pfam_type:Domain;HMM_aln_Length:61; HMM_Length:67; EVALUE:1.2e-20; BITSCORE: 72.7" /note="GO_domain:GO:0044281" /note="GO_domain:GO:0003677" /note="GO_domain:GO:0016779" /note="GO_domain:GO:0034641" /note="GO_domain:GO:0009058" /note="GO_domain:GO:0005730" /note="Enzyme_Code:EC:2.7.7.6" BEGIN 1 MPIFGTARYF RRFSRDLPTR GKVRLVSGVA PLLSFVDTRP SAGRDACSAE HGRRSGDQWG 61 PDVTESLIDL RALLVEREDF EGGMVGRLRE GLAQGGPQVR ALKDIIDTLT KRLAVAAPPQ 121 QKKIHLKLGV ANYFLGHVRV AVDNLLKAEG PLAAFFLGQA HVTLGQSRQY AEDGADTTDH 181 YDAAVKAFER AEKSGYAPQS VQLQRAGVLR LQGHLGESKT ILAKLKDAAA HNAEYYYQEG 241 ALAEAEGDIP RAAKYFERAV ELEPRHSAAL FRLGFLNDQQ GNDYEAIGYY ERCLKYPPVG 301 KGVLYNLGVL YEDNDMYDKA ADCYRRLAKA DPRDERAKLF VKDSEASLSM HYDPEDEQLS 361 QANRVVLEIP ITDFELSVRS RNCLKRMNIR TLGDLTRVTE SQLLASKNFG ETSLEEIKII 421 MNAKQLRIGQ SLDQGQQYEF RYRPQQNLSP EEQATLNKPV SDLNLSVRAR KCMNRLNIGT 481 LGELVQRTAD ELLEAKNFGQ TSLTEVRERL GQFNLKLRGD //