LOCUS VTR92620.1 650 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : Uncultured bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1: Sigma70_r2: Sigma70_r4_2:
WD40: WD40: WD40 protein.
ACCESSION LR593886-1921
PROTEIN_ID VTR92620.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_50940"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|A0A090KPX2|A0A090KPX2_9BACT ;
ALN/Q_length_ratio=1.028 ; DESCRIPTION=Uncultured
bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1 ; EVALUE=2e-39 ;
Q/S_length_ratio=0.561"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DQE6|L0DQE6_SINAD ;
ALN/Q_length_ratio=0.415 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7079 PE=4 SV=1 ; EVALUE=7e-33 ;
Q/S_length_ratio=0.682"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DHB8|L0DHB8_SINAD ;
ALN/Q_length_ratio=0.331 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3834 PE=4 SV=1 ; EVALUE=4e-32 ;
Q/S_length_ratio=1.173"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0D7L2|L0D7L2_SINAD ;
ALN/Q_length_ratio=0.289 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0185 PE=4 SV=1 ; EVALUE=2e-30 ;
Q/S_length_ratio=1.297"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.491 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=4e-30 ;
Q/S_length_ratio=1.059"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.285 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=3e-29 ;
Q/S_length_ratio=1.161"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DIU5|L0DIU5_SINAD ;
ALN/Q_length_ratio=0.328 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4592 PE=4 SV=1 ; EVALUE=6e-29 ;
Q/S_length_ratio=1.136"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.332 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=1e-28 ;
Q/S_length_ratio=1.533"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DFV7|L0DFV7_SINAD ;
ALN/Q_length_ratio=0.323 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3442 PE=4 SV=1 ; EVALUE=2e-28 ;
Q/S_length_ratio=0.530"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DGT0|L0DGT0_SINAD ;
ALN/Q_length_ratio=0.505 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3827 PE=4 SV=1 ; EVALUE=4e-28 ;
Q/S_length_ratio=1.055"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|M5RF19|M5RF19_9PLAN ;
ALN/Q_length_ratio=0.322 ; DESCRIPTION=RNA polymerase
sigma-H factor (Fragment) OS=Rhodopirellula maiorica SM1
GN=RMSM_05023 PE=4 SV=1 ; EVALUE=9e-28 ;
Q/S_length_ratio=2.754"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.329 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=1e-27 ;
Q/S_length_ratio=0.590"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DKD8|L0DKD8_SINAD ;
ALN/Q_length_ratio=0.429 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4965 PE=4 SV=1 ; EVALUE=5e-27 ;
Q/S_length_ratio=0.728"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DJM8|L0DJM8_SINAD ;
ALN/Q_length_ratio=0.522 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4894 PE=4 SV=1 ; EVALUE=3e-26 ;
Q/S_length_ratio=1.474"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DT29|L0DT29_SINAD ;
ALN/Q_length_ratio=0.372 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7487 PE=4 SV=1 ; EVALUE=1e-25 ;
Q/S_length_ratio=1.305"
/note="Pfam_scan:hit_1 (38..105);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:68; HMM_Length:71;
EVALUE:5.5e-10; BITSCORE: 38.7"
/note="Pfam_scan:hit_2 (129..182);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:51; HMM_Length:54;
EVALUE:3.9e-13; BITSCORE: 48.6"
/note="Pfam_scan:hit_3 (429..462); Pfam:PF00400.27:WD40;
Pfam_type:Repeat;HMM_aln_Length:27; HMM_Length:39;
EVALUE:1.1e-05; BITSCORE: 25.1"
/note="Pfam_scan:hit_4 (573..600); Pfam:PF00400.27:WD40;
Pfam_type:Repeat;HMM_aln_Length:25; HMM_Length:39;
EVALUE:0.00044; BITSCORE: 20.0"
/note="Pfam_scan:hit_5 (605..642); Pfam:PF00400.27:WD40;
Pfam_type:Repeat;HMM_aln_Length:34; HMM_Length:39;
EVALUE:0.0002; BITSCORE: 21.0"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MKIPVDVIVA RLSVAHTSDA ELLGRFVASA DGAAFAELVR RYGPLVWRVA RSGTRHSPAA
61 EDVFQATFLA LVRHAAAVRR ADALAGWLHR TAYRLALLAR RAERLPTPLP NEPLVPDDPL
121 DRMTARELLA AVDEEIQVLP IAYRTAIVLC GVQGLSHAEA ATRLGWSVGS VKGRLERARA
181 RLRVRLEARG LAPAVLLGLA GQSGGAGAVP PHLSEAVLAA ARGDAASPVA GRLAGWAVGP
241 TVGYRWAVVA AVTICAVGLA VAVVSRPGSE PAPEPPGLGA ERQTDGSVWS ASLSTDPDDP
301 DQPSATAGVW APDGKHVLTA GSTRVKGNPR MGEVRVWDAA TGAVVHTFRG SATGYDTGCP
361 TLAVRPDGKA VAAGGMRAKS GSAEFFVEEW DWGEEKPRAK LGPDLDAAPI PAAEPPPDRS
421 FQLGRTDNSP SGFVGSVTGL SYSPDGKLLV AACADRYLRV WDRAKGIFVL SLRTERPIRC
481 VAFHPTGAVA VTDDRTGVRF YNPKTGETAS GWSSNRPPGC ASIAFSPDGK HVAAAGGVDG
541 QSLLVQVKQI NPQPHGYLDI GLTAGMPTGP VDLGGVEQVA WAPDGSALAL ACRDGTVRLI
601 PFGSGRLRAV VPAHKGWVYA TQFSPDGTRL LTVGRDAVKV WSLADLMKAK
//