LOCUS VTR92620.1 650 aa PRT BCT 03-FEB-2020 DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma factor : Uncultured bacterium genome assembly Metasoil_fosmids_resub OS=uncultured bacterium PE=4 SV=1: Sigma70_r2: Sigma70_r4_2: WD40: WD40: WD40 protein. ACCESSION LR593886-1921 PROTEIN_ID VTR92620.1 SOURCE Gemmata massiliana ORGANISM Gemmata massiliana Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae; Gemmata. REFERENCE 1 AUTHORS CONSRTM Science for Life Laboratories JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution, Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden FEATURES Qualifiers source /organism="Gemmata massiliana" /chromosome="1" /isolate="Soil9" /mol_type="genomic DNA" /isolation_source="soil" /db_xref="taxon:1210884" protein /locus_tag="SOIL9_50940" /note="BLAST_uniprot:hit_1 ; ACCESSION=tr|A0A090KPX2|A0A090KPX2_9BACT ; ALN/Q_length_ratio=1.028 ; DESCRIPTION=Uncultured bacterium genome assembly Metasoil_fosmids_resub OS=uncultured bacterium PE=4 SV=1 ; EVALUE=2e-39 ; Q/S_length_ratio=0.561" /note="BLAST_uniprot:hit_2 ; ACCESSION=tr|L0DQE6|L0DQE6_SINAD ; ALN/Q_length_ratio=0.415 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_7079 PE=4 SV=1 ; EVALUE=7e-33 ; Q/S_length_ratio=0.682" /note="BLAST_uniprot:hit_3 ; ACCESSION=tr|L0DHB8|L0DHB8_SINAD ; ALN/Q_length_ratio=0.331 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_3834 PE=4 SV=1 ; EVALUE=4e-32 ; Q/S_length_ratio=1.173" /note="BLAST_uniprot:hit_4 ; ACCESSION=tr|L0D7L2|L0D7L2_SINAD ; ALN/Q_length_ratio=0.289 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_0185 PE=4 SV=1 ; EVALUE=2e-30 ; Q/S_length_ratio=1.297" /note="BLAST_uniprot:hit_5 ; ACCESSION=tr|L0DM90|L0DM90_SINAD ; ALN/Q_length_ratio=0.491 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_6419 PE=4 SV=1 ; EVALUE=4e-30 ; Q/S_length_ratio=1.059" /note="BLAST_uniprot:hit_6 ; ACCESSION=tr|L0D6V6|L0D6V6_SINAD ; ALN/Q_length_ratio=0.285 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_0102 PE=4 SV=1 ; EVALUE=3e-29 ; Q/S_length_ratio=1.161" /note="BLAST_uniprot:hit_7 ; ACCESSION=tr|L0DIU5|L0DIU5_SINAD ; ALN/Q_length_ratio=0.328 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_4592 PE=4 SV=1 ; EVALUE=6e-29 ; Q/S_length_ratio=1.136" /note="BLAST_uniprot:hit_8 ; ACCESSION=tr|L0DGG0|L0DGG0_SINAD ; ALN/Q_length_ratio=0.332 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_4264 PE=4 SV=1 ; EVALUE=1e-28 ; Q/S_length_ratio=1.533" /note="BLAST_uniprot:hit_9 ; ACCESSION=tr|L0DFV7|L0DFV7_SINAD ; ALN/Q_length_ratio=0.323 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_3442 PE=4 SV=1 ; EVALUE=2e-28 ; Q/S_length_ratio=0.530" /note="BLAST_uniprot:hit_10 ; ACCESSION=tr|L0DGT0|L0DGT0_SINAD ; ALN/Q_length_ratio=0.505 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_3827 PE=4 SV=1 ; EVALUE=4e-28 ; Q/S_length_ratio=1.055" /note="BLAST_uniprot:hit_11 ; ACCESSION=tr|M5RF19|M5RF19_9PLAN ; ALN/Q_length_ratio=0.322 ; DESCRIPTION=RNA polymerase sigma-H factor (Fragment) OS=Rhodopirellula maiorica SM1 GN=RMSM_05023 PE=4 SV=1 ; EVALUE=9e-28 ; Q/S_length_ratio=2.754" /note="BLAST_uniprot:hit_12 ; ACCESSION=tr|L0DDR3|L0DDR3_SINAD ; ALN/Q_length_ratio=0.329 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_2497 PE=4 SV=1 ; EVALUE=1e-27 ; Q/S_length_ratio=0.590" /note="BLAST_uniprot:hit_13 ; ACCESSION=tr|L0DKD8|L0DKD8_SINAD ; ALN/Q_length_ratio=0.429 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_4965 PE=4 SV=1 ; EVALUE=5e-27 ; Q/S_length_ratio=0.728" /note="BLAST_uniprot:hit_14 ; ACCESSION=tr|L0DJM8|L0DJM8_SINAD ; ALN/Q_length_ratio=0.522 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_4894 PE=4 SV=1 ; EVALUE=3e-26 ; Q/S_length_ratio=1.474" /note="BLAST_uniprot:hit_15 ; ACCESSION=tr|L0DT29|L0DT29_SINAD ; ALN/Q_length_ratio=0.372 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_7487 PE=4 SV=1 ; EVALUE=1e-25 ; Q/S_length_ratio=1.305" /note="Pfam_scan:hit_1 (38..105); Pfam:PF04542.9:Sigma70_r2; Pfam_type:Domain;HMM_aln_Length:68; HMM_Length:71; EVALUE:5.5e-10; BITSCORE: 38.7" /note="Pfam_scan:hit_2 (129..182); Pfam:PF08281.7:Sigma70_r4_2; Pfam_type:Domain;HMM_aln_Length:51; HMM_Length:54; EVALUE:3.9e-13; BITSCORE: 48.6" /note="Pfam_scan:hit_3 (429..462); Pfam:PF00400.27:WD40; Pfam_type:Repeat;HMM_aln_Length:27; HMM_Length:39; EVALUE:1.1e-05; BITSCORE: 25.1" /note="Pfam_scan:hit_4 (573..600); Pfam:PF00400.27:WD40; Pfam_type:Repeat;HMM_aln_Length:25; HMM_Length:39; EVALUE:0.00044; BITSCORE: 20.0" /note="Pfam_scan:hit_5 (605..642); Pfam:PF00400.27:WD40; Pfam_type:Repeat;HMM_aln_Length:34; HMM_Length:39; EVALUE:0.0002; BITSCORE: 21.0" /note="GO_domain:GO:0003677" /note="GO_domain:GO:0001071" /note="GO_domain:GO:0000988" /note="GO_domain:GO:0034641" /note="GO_domain:GO:0009058" /note="GO_domain:GO:0043234" /note="GO_domain:GO:0005622" BEGIN 1 MKIPVDVIVA RLSVAHTSDA ELLGRFVASA DGAAFAELVR RYGPLVWRVA RSGTRHSPAA 61 EDVFQATFLA LVRHAAAVRR ADALAGWLHR TAYRLALLAR RAERLPTPLP NEPLVPDDPL 121 DRMTARELLA AVDEEIQVLP IAYRTAIVLC GVQGLSHAEA ATRLGWSVGS VKGRLERARA 181 RLRVRLEARG LAPAVLLGLA GQSGGAGAVP PHLSEAVLAA ARGDAASPVA GRLAGWAVGP 241 TVGYRWAVVA AVTICAVGLA VAVVSRPGSE PAPEPPGLGA ERQTDGSVWS ASLSTDPDDP 301 DQPSATAGVW APDGKHVLTA GSTRVKGNPR MGEVRVWDAA TGAVVHTFRG SATGYDTGCP 361 TLAVRPDGKA VAAGGMRAKS GSAEFFVEEW DWGEEKPRAK LGPDLDAAPI PAAEPPPDRS 421 FQLGRTDNSP SGFVGSVTGL SYSPDGKLLV AACADRYLRV WDRAKGIFVL SLRTERPIRC 481 VAFHPTGAVA VTDDRTGVRF YNPKTGETAS GWSSNRPPGC ASIAFSPDGK HVAAAGGVDG 541 QSLLVQVKQI NPQPHGYLDI GLTAGMPTGP VDLGGVEQVA WAPDGSALAL ACRDGTVRLI 601 PFGSGRLRAV VPAHKGWVYA TQFSPDGTRL LTVGRDAVKV WSLADLMKAK //