LOCUS VTR92290.1 531 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : Uncultured bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1: Sigma70_r2: Sigma70_r4_2:
F5_F8_type_C protein.
ACCESSION LR593886-1591
PROTEIN_ID VTR92290.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_54240"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|A0A090KPX2|A0A090KPX2_9BACT ;
ALN/Q_length_ratio=0.527 ; DESCRIPTION=Uncultured
bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1 ; EVALUE=1e-52 ;
Q/S_length_ratio=0.458"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DHB8|L0DHB8_SINAD ;
ALN/Q_length_ratio=0.563 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3834 PE=4 SV=1 ; EVALUE=8e-45 ;
Q/S_length_ratio=0.958"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.463 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=1e-41 ;
Q/S_length_ratio=1.102"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.554 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=9e-40 ;
Q/S_length_ratio=0.482"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DFV7|L0DFV7_SINAD ;
ALN/Q_length_ratio=0.414 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3442 PE=4 SV=1 ; EVALUE=5e-39 ;
Q/S_length_ratio=0.433"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DIU5|L0DIU5_SINAD ;
ALN/Q_length_ratio=0.537 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4592 PE=4 SV=1 ; EVALUE=6e-39 ;
Q/S_length_ratio=0.928"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.503 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=9e-39 ;
Q/S_length_ratio=1.252"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.669 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=1e-38 ;
Q/S_length_ratio=0.948"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0D7L2|L0D7L2_SINAD ;
ALN/Q_length_ratio=0.529 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0185 PE=4 SV=1 ; EVALUE=2e-37 ;
Q/S_length_ratio=1.060"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.535 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=2e-37 ;
Q/S_length_ratio=0.865"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DQ81|L0DQ81_SINAD ;
ALN/Q_length_ratio=0.582 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7511 PE=4 SV=1 ; EVALUE=9e-36 ;
Q/S_length_ratio=0.615"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DR85|L0DR85_SINAD ;
ALN/Q_length_ratio=0.540 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7453 PE=4 SV=1 ; EVALUE=2e-35 ;
Q/S_length_ratio=0.889"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DJM8|L0DJM8_SINAD ;
ALN/Q_length_ratio=0.486 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4894 PE=4 SV=1 ; EVALUE=3e-35 ;
Q/S_length_ratio=1.204"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DD82|L0DD82_SINAD ;
ALN/Q_length_ratio=0.546 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2507 PE=4 SV=1 ; EVALUE=7e-35 ;
Q/S_length_ratio=0.590"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.373 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=3e-34 ;
Q/S_length_ratio=1.665"
/note="Pfam_scan:hit_1 (45..112);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:67; HMM_Length:71;
EVALUE:1e-10; BITSCORE: 41.0"
/note="Pfam_scan:hit_2 (141..194);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:53; HMM_Length:54;
EVALUE:4.5e-12; BITSCORE: 45.2"
/note="Pfam_scan:hit_3 (403..526);
Pfam:PF00754.20:F5_F8_type_C;
Pfam_type:Domain;HMM_aln_Length:118; HMM_Length:129;
EVALUE:2.3e-11; BITSCORE: 43.6"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MTIRAARLLD HLNRLTTSVD LETLSDSALL TRFARQHDHS AFTTLVARHG SMVYNVCYRR
61 LGNVHAAEDA FQAAFLVLAR KAGSLRCHSL TAWLHGVAVR VALNARRAIQ RCPVRETLTA
121 TGEIPGAHTD PLFRLSVHEL LQALEEEVQR LPRAYRLAVV LCCLEGLSQE EAAHRLGWTV
181 GSVKGRLERG RTRLRELLAR RGLVPAVVAT VLQATRNELS AALTVRAVKV ALASRELESP
241 HQAVVSGEVL RLAQHTLKGM SMFKWKLAVA LALFLGVTTF GAFAQRDGQD KEAADKKSPP
301 MMVTVDLNDG SRVVGKSDAL KELLLRVSFG EVRIPVEQVA SMQFKDDQGG TVVRFHNGDQ
361 LTGTLDLKAL GDLKIVTALG ETKVPLKLVT ACKLEAAPGR AKVTARASSI GEGTDPNNPF
421 RHDDDTRWNS GGYAPAWIEA DLGAVRTLDR ITLVIGQHPK GETEHEIWVS DEPIGDDRTK
481 AKRVHTFRGE TDNDQELKFT FAAKSTARYV QIYTTASPSW VDWHNIDLQV R
//