LOCUS VTR92290.1 531 aa PRT BCT 03-FEB-2020 DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma factor : Uncultured bacterium genome assembly Metasoil_fosmids_resub OS=uncultured bacterium PE=4 SV=1: Sigma70_r2: Sigma70_r4_2: F5_F8_type_C protein. ACCESSION LR593886-1591 PROTEIN_ID VTR92290.1 SOURCE Gemmata massiliana ORGANISM Gemmata massiliana Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae; Gemmata. REFERENCE 1 AUTHORS CONSRTM Science for Life Laboratories JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution, Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden FEATURES Qualifiers source /organism="Gemmata massiliana" /chromosome="1" /isolate="Soil9" /mol_type="genomic DNA" /isolation_source="soil" /db_xref="taxon:1210884" protein /locus_tag="SOIL9_54240" /note="BLAST_uniprot:hit_1 ; ACCESSION=tr|A0A090KPX2|A0A090KPX2_9BACT ; ALN/Q_length_ratio=0.527 ; DESCRIPTION=Uncultured bacterium genome assembly Metasoil_fosmids_resub OS=uncultured bacterium PE=4 SV=1 ; EVALUE=1e-52 ; Q/S_length_ratio=0.458" /note="BLAST_uniprot:hit_2 ; ACCESSION=tr|L0DHB8|L0DHB8_SINAD ; ALN/Q_length_ratio=0.563 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_3834 PE=4 SV=1 ; EVALUE=8e-45 ; Q/S_length_ratio=0.958" /note="BLAST_uniprot:hit_3 ; ACCESSION=tr|L0D9E1|L0D9E1_SINAD ; ALN/Q_length_ratio=0.463 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_0869 PE=4 SV=1 ; EVALUE=1e-41 ; Q/S_length_ratio=1.102" /note="BLAST_uniprot:hit_4 ; ACCESSION=tr|L0DDR3|L0DDR3_SINAD ; ALN/Q_length_ratio=0.554 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_2497 PE=4 SV=1 ; EVALUE=9e-40 ; Q/S_length_ratio=0.482" /note="BLAST_uniprot:hit_5 ; ACCESSION=tr|L0DFV7|L0DFV7_SINAD ; ALN/Q_length_ratio=0.414 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_3442 PE=4 SV=1 ; EVALUE=5e-39 ; Q/S_length_ratio=0.433" /note="BLAST_uniprot:hit_6 ; ACCESSION=tr|L0DIU5|L0DIU5_SINAD ; ALN/Q_length_ratio=0.537 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_4592 PE=4 SV=1 ; EVALUE=6e-39 ; Q/S_length_ratio=0.928" /note="BLAST_uniprot:hit_7 ; ACCESSION=tr|L0DGG0|L0DGG0_SINAD ; ALN/Q_length_ratio=0.503 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_4264 PE=4 SV=1 ; EVALUE=9e-39 ; Q/S_length_ratio=1.252" /note="BLAST_uniprot:hit_8 ; ACCESSION=tr|L0D6V6|L0D6V6_SINAD ; ALN/Q_length_ratio=0.669 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_0102 PE=4 SV=1 ; EVALUE=1e-38 ; Q/S_length_ratio=0.948" /note="BLAST_uniprot:hit_10 ; ACCESSION=tr|L0D7L2|L0D7L2_SINAD ; ALN/Q_length_ratio=0.529 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_0185 PE=4 SV=1 ; EVALUE=2e-37 ; Q/S_length_ratio=1.060" /note="BLAST_uniprot:hit_9 ; ACCESSION=tr|L0DM90|L0DM90_SINAD ; ALN/Q_length_ratio=0.535 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_6419 PE=4 SV=1 ; EVALUE=2e-37 ; Q/S_length_ratio=0.865" /note="BLAST_uniprot:hit_11 ; ACCESSION=tr|L0DQ81|L0DQ81_SINAD ; ALN/Q_length_ratio=0.582 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_7511 PE=4 SV=1 ; EVALUE=9e-36 ; Q/S_length_ratio=0.615" /note="BLAST_uniprot:hit_12 ; ACCESSION=tr|L0DR85|L0DR85_SINAD ; ALN/Q_length_ratio=0.540 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_7453 PE=4 SV=1 ; EVALUE=2e-35 ; Q/S_length_ratio=0.889" /note="BLAST_uniprot:hit_13 ; ACCESSION=tr|L0DJM8|L0DJM8_SINAD ; ALN/Q_length_ratio=0.486 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_4894 PE=4 SV=1 ; EVALUE=3e-35 ; Q/S_length_ratio=1.204" /note="BLAST_uniprot:hit_14 ; ACCESSION=tr|L0DD82|L0DD82_SINAD ; ALN/Q_length_ratio=0.546 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_2507 PE=4 SV=1 ; EVALUE=7e-35 ; Q/S_length_ratio=0.590" /note="BLAST_uniprot:hit_15 ; ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ; ALN/Q_length_ratio=0.373 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_5383 PE=4 SV=1 ; EVALUE=3e-34 ; Q/S_length_ratio=1.665" /note="Pfam_scan:hit_1 (45..112); Pfam:PF04542.9:Sigma70_r2; Pfam_type:Domain;HMM_aln_Length:67; HMM_Length:71; EVALUE:1e-10; BITSCORE: 41.0" /note="Pfam_scan:hit_2 (141..194); Pfam:PF08281.7:Sigma70_r4_2; Pfam_type:Domain;HMM_aln_Length:53; HMM_Length:54; EVALUE:4.5e-12; BITSCORE: 45.2" /note="Pfam_scan:hit_3 (403..526); Pfam:PF00754.20:F5_F8_type_C; Pfam_type:Domain;HMM_aln_Length:118; HMM_Length:129; EVALUE:2.3e-11; BITSCORE: 43.6" /note="GO_domain:GO:0003677" /note="GO_domain:GO:0001071" /note="GO_domain:GO:0000988" /note="GO_domain:GO:0034641" /note="GO_domain:GO:0009058" /note="GO_domain:GO:0043234" /note="GO_domain:GO:0005622" BEGIN 1 MTIRAARLLD HLNRLTTSVD LETLSDSALL TRFARQHDHS AFTTLVARHG SMVYNVCYRR 61 LGNVHAAEDA FQAAFLVLAR KAGSLRCHSL TAWLHGVAVR VALNARRAIQ RCPVRETLTA 121 TGEIPGAHTD PLFRLSVHEL LQALEEEVQR LPRAYRLAVV LCCLEGLSQE EAAHRLGWTV 181 GSVKGRLERG RTRLRELLAR RGLVPAVVAT VLQATRNELS AALTVRAVKV ALASRELESP 241 HQAVVSGEVL RLAQHTLKGM SMFKWKLAVA LALFLGVTTF GAFAQRDGQD KEAADKKSPP 301 MMVTVDLNDG SRVVGKSDAL KELLLRVSFG EVRIPVEQVA SMQFKDDQGG TVVRFHNGDQ 361 LTGTLDLKAL GDLKIVTALG ETKVPLKLVT ACKLEAAPGR AKVTARASSI GEGTDPNNPF 421 RHDDDTRWNS GGYAPAWIEA DLGAVRTLDR ITLVIGQHPK GETEHEIWVS DEPIGDDRTK 481 AKRVHTFRGE TDNDQELKFT FAAKSTARYV QIYTTASPSW VDWHNIDLQV R //