LOCUS VTR92278.1 335 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase sigma-70 factor : RNA
polymerase sigma factor OS=Isosphaera pallida (strain
ATCC 43644 / DSM 9630 / IS1B) GN=Isop_3566 PE=3 SV=1:
Sigma70_r2: Sigma70_r3: Sigma70_r4 protein.
ACCESSION LR593886-1579
PROTEIN_ID VTR92278.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_54360"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|E8QXT6|E8QXT6_ISOPI ;
ALN/Q_length_ratio=0.940 ; DESCRIPTION=RNA polymerase
sigma factor OS=Isosphaera pallida (strain ATCC 43644 /
DSM 9630 / IS1B) GN=Isop_3566 PE=3 SV=1 ; EVALUE=1e-76 ;
Q/S_length_ratio=1.040"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|A0A078JL81|A0A078JL81_BRANA ;
ALN/Q_length_ratio=0.919 ; DESCRIPTION=BnaAnng21640D
protein (Fragment) OS=Brassica napus GN=BnaAnng21640D PE=4
SV=1 ; EVALUE=2e-46 ; Q/S_length_ratio=0.991"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|M4DL32|M4DL32_BRARP ;
ALN/Q_length_ratio=0.919 ; DESCRIPTION=Uncharacterized
protein OS=Brassica rapa subsp. pekinensis GN=Bra017213
PE=4 SV=1 ; EVALUE=3e-44 ; Q/S_length_ratio=0.629"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|A0A078G1I1|A0A078G1I1_BRANA ;
ALN/Q_length_ratio=0.919 ; DESCRIPTION=BnaA04g21190D
protein OS=Brassica napus GN=BnaA04g21190D PE=4 SV=1 ;
EVALUE=9e-44 ; Q/S_length_ratio=0.616"
/note="BLAST_uniprot:hit_5 ; ACCESSION=Q9LD95 ;
ALN/Q_length_ratio=0.958 ; DESCRIPTION=RNA polymerase
sigma factor sigF, chloroplastic OS=Arabidopsis thaliana
GN=SIGF PE=1 SV=1 ; EVALUE=3e-43 ; Q/S_length_ratio=0.612"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|D5RGU0|D5RGU0_9PROT ;
ALN/Q_length_ratio=0.675 ; DESCRIPTION=RNA polymerase
sigma factor RpoD OS=Roseomonas cervicalis ATCC 49957
GN=rpoD PE=3 SV=1 ; EVALUE=1e-42 ; Q/S_length_ratio=0.523"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|D7LJA3|D7LJA3_ARALL ;
ALN/Q_length_ratio=0.937 ; DESCRIPTION=RNA polymerase
sigma-70 factor OS=Arabidopsis lyrata subsp. lyrata
GN=SIGF PE=4 SV=1 ; EVALUE=4e-41 ; Q/S_length_ratio=0.614"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|D1CB24|D1CB24_THET1 ;
ALN/Q_length_ratio=0.675 ; DESCRIPTION=RNA polymerase
sigma factor OS=Thermobaculum terrenum (strain ATCC
BAA-798 / YNP1) GN=Tter_1073 PE=3 SV=1 ; EVALUE=4e-41 ;
Q/S_length_ratio=0.724"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|R0HNL5|R0HNL5_9BRAS ;
ALN/Q_length_ratio=0.943 ; DESCRIPTION=Uncharacterized
protein OS=Capsella rubella GN=CARUB_v10022939mg PE=4 SV=1
; EVALUE=4e-41 ; Q/S_length_ratio=0.612"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|V4MIB9|V4MIB9_EUTSA ;
ALN/Q_length_ratio=0.690 ; DESCRIPTION=Uncharacterized
protein OS=Eutrema salsugineum GN=EUTSA_v10016472mg PE=4
SV=1 ; EVALUE=5e-41 ; Q/S_length_ratio=0.614"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|E4MX68|E4MX68_THEHA ;
ALN/Q_length_ratio=0.690 ; DESCRIPTION=mRNA, clone:
RTFL01-17-E04 OS=Thellungiella halophila PE=2 SV=1 ;
EVALUE=5e-41 ; Q/S_length_ratio=0.612"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|V4M7N8|V4M7N8_EUTSA ;
ALN/Q_length_ratio=0.690 ; DESCRIPTION=Uncharacterized
protein OS=Eutrema salsugineum GN=EUTSA_v10016472mg PE=4
SV=1 ; EVALUE=5e-41 ; Q/S_length_ratio=0.612"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|A0A061ET94|A0A061ET94_THECC ;
ALN/Q_length_ratio=0.860 ; DESCRIPTION=RNA polymerase
sigma factor rpoD, putative OS=Theobroma cacao
GN=TCM_022198 PE=4 SV=1 ; EVALUE=6e-41 ;
Q/S_length_ratio=0.590"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|M5SWW7|M5SWW7_9PLAN ;
ALN/Q_length_ratio=0.704 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula sp. SWK7 GN=RRSWK_06097
PE=3 SV=1 ; EVALUE=7e-41 ; Q/S_length_ratio=0.596"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|M5UJ02|M5UJ02_9PLAN ;
ALN/Q_length_ratio=0.704 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rhodopirellula sallentina SM41
GN=RSSM_00775 PE=3 SV=1 ; EVALUE=7e-41 ;
Q/S_length_ratio=0.633"
/note="Pfam_scan:hit_1 (103..173);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:68; HMM_Length:71;
EVALUE:1.5e-14; BITSCORE: 53.3"
/note="Pfam_scan:hit_2 (182..257);
Pfam:PF04539.11:Sigma70_r3;
Pfam_type:Family;HMM_aln_Length:63; HMM_Length:78;
EVALUE:5.6e-06; BITSCORE: 26.1"
/note="Pfam_scan:hit_3 (268..321);
Pfam:PF04545.11:Sigma70_r4;
Pfam_type:Domain;HMM_aln_Length:48; HMM_Length:50;
EVALUE:1.9e-14; BITSCORE: 52.6"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MKTARRKRSG QSAKVDDTSL TTFSSDLLTP EEERELLTSF WDCKSELVRV LLRHYPNELR
61 AVRPPLEPWP MAQFIREHCT DARCDVIAVR RLRDRYVHYK HRLASANIRL AAHVAKRFRH
121 HSLAYSDLLQ EAVCGLMQAI DRFDVSHGTR LATYATWWIR QTLQIAVARQ SHLVSLSPHH
181 LQELGLLQQE SEALAHGGKH LPSPQELASR TGSSLEHLTH LQTATRTPVS LNAVLDDDSD
241 FKLTEAMPDT GTLVMQENNE RQEALGFLME NLRPRERKVL DLRFGLTGNG THSLRQIGHL
301 LRISKERVRQ IQNRALEKLK ANAERVGWEP TLLLE
//