LOCUS VTR92278.1 335 aa PRT BCT 03-FEB-2020 DEFINITION Gemmata massiliana rna polymerase sigma-70 factor : RNA polymerase sigma factor OS=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) GN=Isop_3566 PE=3 SV=1: Sigma70_r2: Sigma70_r3: Sigma70_r4 protein. ACCESSION LR593886-1579 PROTEIN_ID VTR92278.1 SOURCE Gemmata massiliana ORGANISM Gemmata massiliana Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae; Gemmata. REFERENCE 1 AUTHORS CONSRTM Science for Life Laboratories JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution, Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden FEATURES Qualifiers source /organism="Gemmata massiliana" /chromosome="1" /isolate="Soil9" /mol_type="genomic DNA" /isolation_source="soil" /db_xref="taxon:1210884" protein /locus_tag="SOIL9_54360" /note="BLAST_uniprot:hit_1 ; ACCESSION=tr|E8QXT6|E8QXT6_ISOPI ; ALN/Q_length_ratio=0.940 ; DESCRIPTION=RNA polymerase sigma factor OS=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) GN=Isop_3566 PE=3 SV=1 ; EVALUE=1e-76 ; Q/S_length_ratio=1.040" /note="BLAST_uniprot:hit_2 ; ACCESSION=tr|A0A078JL81|A0A078JL81_BRANA ; ALN/Q_length_ratio=0.919 ; DESCRIPTION=BnaAnng21640D protein (Fragment) OS=Brassica napus GN=BnaAnng21640D PE=4 SV=1 ; EVALUE=2e-46 ; Q/S_length_ratio=0.991" /note="BLAST_uniprot:hit_3 ; ACCESSION=tr|M4DL32|M4DL32_BRARP ; ALN/Q_length_ratio=0.919 ; DESCRIPTION=Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra017213 PE=4 SV=1 ; EVALUE=3e-44 ; Q/S_length_ratio=0.629" /note="BLAST_uniprot:hit_4 ; ACCESSION=tr|A0A078G1I1|A0A078G1I1_BRANA ; ALN/Q_length_ratio=0.919 ; DESCRIPTION=BnaA04g21190D protein OS=Brassica napus GN=BnaA04g21190D PE=4 SV=1 ; EVALUE=9e-44 ; Q/S_length_ratio=0.616" /note="BLAST_uniprot:hit_5 ; ACCESSION=Q9LD95 ; ALN/Q_length_ratio=0.958 ; DESCRIPTION=RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana GN=SIGF PE=1 SV=1 ; EVALUE=3e-43 ; Q/S_length_ratio=0.612" /note="BLAST_uniprot:hit_6 ; ACCESSION=tr|D5RGU0|D5RGU0_9PROT ; ALN/Q_length_ratio=0.675 ; DESCRIPTION=RNA polymerase sigma factor RpoD OS=Roseomonas cervicalis ATCC 49957 GN=rpoD PE=3 SV=1 ; EVALUE=1e-42 ; Q/S_length_ratio=0.523" /note="BLAST_uniprot:hit_7 ; ACCESSION=tr|D7LJA3|D7LJA3_ARALL ; ALN/Q_length_ratio=0.937 ; DESCRIPTION=RNA polymerase sigma-70 factor OS=Arabidopsis lyrata subsp. lyrata GN=SIGF PE=4 SV=1 ; EVALUE=4e-41 ; Q/S_length_ratio=0.614" /note="BLAST_uniprot:hit_8 ; ACCESSION=tr|D1CB24|D1CB24_THET1 ; ALN/Q_length_ratio=0.675 ; DESCRIPTION=RNA polymerase sigma factor OS=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) GN=Tter_1073 PE=3 SV=1 ; EVALUE=4e-41 ; Q/S_length_ratio=0.724" /note="BLAST_uniprot:hit_9 ; ACCESSION=tr|R0HNL5|R0HNL5_9BRAS ; ALN/Q_length_ratio=0.943 ; DESCRIPTION=Uncharacterized protein OS=Capsella rubella GN=CARUB_v10022939mg PE=4 SV=1 ; EVALUE=4e-41 ; Q/S_length_ratio=0.612" /note="BLAST_uniprot:hit_12 ; ACCESSION=tr|V4MIB9|V4MIB9_EUTSA ; ALN/Q_length_ratio=0.690 ; DESCRIPTION=Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10016472mg PE=4 SV=1 ; EVALUE=5e-41 ; Q/S_length_ratio=0.614" /note="BLAST_uniprot:hit_10 ; ACCESSION=tr|E4MX68|E4MX68_THEHA ; ALN/Q_length_ratio=0.690 ; DESCRIPTION=mRNA, clone: RTFL01-17-E04 OS=Thellungiella halophila PE=2 SV=1 ; EVALUE=5e-41 ; Q/S_length_ratio=0.612" /note="BLAST_uniprot:hit_11 ; ACCESSION=tr|V4M7N8|V4M7N8_EUTSA ; ALN/Q_length_ratio=0.690 ; DESCRIPTION=Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10016472mg PE=4 SV=1 ; EVALUE=5e-41 ; Q/S_length_ratio=0.612" /note="BLAST_uniprot:hit_13 ; ACCESSION=tr|A0A061ET94|A0A061ET94_THECC ; ALN/Q_length_ratio=0.860 ; DESCRIPTION=RNA polymerase sigma factor rpoD, putative OS=Theobroma cacao GN=TCM_022198 PE=4 SV=1 ; EVALUE=6e-41 ; Q/S_length_ratio=0.590" /note="BLAST_uniprot:hit_15 ; ACCESSION=tr|M5SWW7|M5SWW7_9PLAN ; ALN/Q_length_ratio=0.704 ; DESCRIPTION=RNA polymerase sigma factor OS=Rhodopirellula sp. SWK7 GN=RRSWK_06097 PE=3 SV=1 ; EVALUE=7e-41 ; Q/S_length_ratio=0.596" /note="BLAST_uniprot:hit_14 ; ACCESSION=tr|M5UJ02|M5UJ02_9PLAN ; ALN/Q_length_ratio=0.704 ; DESCRIPTION=RNA polymerase sigma factor OS=Rhodopirellula sallentina SM41 GN=RSSM_00775 PE=3 SV=1 ; EVALUE=7e-41 ; Q/S_length_ratio=0.633" /note="Pfam_scan:hit_1 (103..173); Pfam:PF04542.9:Sigma70_r2; Pfam_type:Domain;HMM_aln_Length:68; HMM_Length:71; EVALUE:1.5e-14; BITSCORE: 53.3" /note="Pfam_scan:hit_2 (182..257); Pfam:PF04539.11:Sigma70_r3; Pfam_type:Family;HMM_aln_Length:63; HMM_Length:78; EVALUE:5.6e-06; BITSCORE: 26.1" /note="Pfam_scan:hit_3 (268..321); Pfam:PF04545.11:Sigma70_r4; Pfam_type:Domain;HMM_aln_Length:48; HMM_Length:50; EVALUE:1.9e-14; BITSCORE: 52.6" /note="GO_domain:GO:0003677" /note="GO_domain:GO:0001071" /note="GO_domain:GO:0000988" /note="GO_domain:GO:0034641" /note="GO_domain:GO:0009058" /note="GO_domain:GO:0043234" /note="GO_domain:GO:0005622" BEGIN 1 MKTARRKRSG QSAKVDDTSL TTFSSDLLTP EEERELLTSF WDCKSELVRV LLRHYPNELR 61 AVRPPLEPWP MAQFIREHCT DARCDVIAVR RLRDRYVHYK HRLASANIRL AAHVAKRFRH 121 HSLAYSDLLQ EAVCGLMQAI DRFDVSHGTR LATYATWWIR QTLQIAVARQ SHLVSLSPHH 181 LQELGLLQQE SEALAHGGKH LPSPQELASR TGSSLEHLTH LQTATRTPVS LNAVLDDDSD 241 FKLTEAMPDT GTLVMQENNE RQEALGFLME NLRPRERKVL DLRFGLTGNG THSLRQIGHL 301 LRISKERVRQ IQNRALEKLK ANAERVGWEP TLLLE //