LOCUS VTR92103.1 516 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_4264 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2 protein.
ACCESSION LR593886-1404
PROTEIN_ID VTR92103.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_56110"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.576 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=5e-44 ;
Q/S_length_ratio=1.217"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DT29|L0DT29_SINAD ;
ALN/Q_length_ratio=0.498 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7487 PE=4 SV=1 ; EVALUE=5e-43 ;
Q/S_length_ratio=1.036"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.510 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=3e-39 ;
Q/S_length_ratio=0.840"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DIU5|L0DIU5_SINAD ;
ALN/Q_length_ratio=0.519 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4592 PE=4 SV=1 ; EVALUE=3e-38 ;
Q/S_length_ratio=0.902"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.492 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=4e-38 ;
Q/S_length_ratio=0.921"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DQE6|L0DQE6_SINAD ;
ALN/Q_length_ratio=0.541 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7079 PE=4 SV=1 ; EVALUE=3e-37 ;
Q/S_length_ratio=0.541"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.498 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=2e-34 ;
Q/S_length_ratio=0.468"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DR85|L0DR85_SINAD ;
ALN/Q_length_ratio=0.529 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7453 PE=4 SV=1 ; EVALUE=2e-34 ;
Q/S_length_ratio=0.864"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DHB1|L0DHB1_SINAD ;
ALN/Q_length_ratio=0.610 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4458 PE=4 SV=1 ; EVALUE=3e-34 ;
Q/S_length_ratio=0.530"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DD82|L0DD82_SINAD ;
ALN/Q_length_ratio=0.510 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2507 PE=4 SV=1 ; EVALUE=1e-33 ;
Q/S_length_ratio=0.573"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DIK4|L0DIK4_SINAD ;
ALN/Q_length_ratio=0.568 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4459 PE=4 SV=1 ; EVALUE=2e-33 ;
Q/S_length_ratio=0.527"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.579 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=2e-33 ;
Q/S_length_ratio=1.071"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DHB8|L0DHB8_SINAD ;
ALN/Q_length_ratio=0.624 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3834 PE=4 SV=1 ; EVALUE=3e-33 ;
Q/S_length_ratio=0.931"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DHG5|L0DHG5_SINAD ;
ALN/Q_length_ratio=0.626 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3888 PE=4 SV=1 ; EVALUE=7e-33 ;
Q/S_length_ratio=0.735"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DKD8|L0DKD8_SINAD ;
ALN/Q_length_ratio=0.591 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4965 PE=4 SV=1 ; EVALUE=1e-32 ;
Q/S_length_ratio=0.578"
/note="Pfam_scan:hit_1 (48..118);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:67; HMM_Length:71;
EVALUE:2.8e-09; BITSCORE: 36.4"
/note="Pfam_scan:hit_2 (141..194);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:50; HMM_Length:54;
EVALUE:4.7e-11; BITSCORE: 41.9"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MVRKHDAPDT LPALVRATLS SVRLAELSDG ELLVRFVVTR DNELFAELVR RLGPTVLGVC
61 RRLLGTGPDA EDAFQVAFMV LVRRAGSVRP PGRVAAWLHG VALLTARKAR HVRNRRAARE
121 SRPDAPVERA GPCREWEPDL AEVLDAELDR LPAKYRLPVV LCEVRELTVA QAAAELGWPV
181 GTVASRLSRG RAALANRLRR RGVTVGSVLF ATGGIRAATA QVPAHFIGAA VRAADTGGTV
241 SSAVTLPLLN EVLRTMTLSQ VRMVGACVLV TAAVLGGFGL LRTTVGAAAP SLENPAVAKK
301 EPLNRAIDED DDRRAAAELV LTIQVVSVKE VVNGANKDVT VIAKVLGVEK SAFGTRKGEE
361 IAITYTDSAK LIPGSESMPA LEKGGVYPAF LNRNDKEYQP AAWAASFRMT PGGGRVKENK
421 NAAERFGAAM HTVDTFLKAK TTDPKRDELQ KAVIAIGQSG EHNGYVWVHA RLSWECGFLE
481 ARKAELGNNL TKEQVKEIDD QVAHLKRTQI LIDAPK
//