LOCUS VTR91796.1 393 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_0185 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2 protein.
ACCESSION LR593886-1097
PROTEIN_ID VTR91796.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_59180"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0D7L2|L0D7L2_SINAD ;
ALN/Q_length_ratio=0.751 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0185 PE=4 SV=1 ; EVALUE=1e-43 ;
Q/S_length_ratio=0.784"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.720 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=5e-42 ;
Q/S_length_ratio=0.927"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.486 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=1e-39 ;
Q/S_length_ratio=1.232"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.784 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=3e-37 ;
Q/S_length_ratio=0.640"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DJM8|L0DJM8_SINAD ;
ALN/Q_length_ratio=0.740 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4894 PE=4 SV=1 ; EVALUE=2e-36 ;
Q/S_length_ratio=0.891"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DQA3|L0DQA3_SINAD ;
ALN/Q_length_ratio=0.733 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6979 PE=4 SV=1 ; EVALUE=4e-36 ;
Q/S_length_ratio=0.883"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DIU5|L0DIU5_SINAD ;
ALN/Q_length_ratio=0.626 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4592 PE=4 SV=1 ; EVALUE=5e-35 ;
Q/S_length_ratio=0.687"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DA12|L0DA12_SINAD ;
ALN/Q_length_ratio=0.687 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_1318 PE=4 SV=1 ; EVALUE=2e-34 ;
Q/S_length_ratio=0.543"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DR85|L0DR85_SINAD ;
ALN/Q_length_ratio=0.858 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7453 PE=4 SV=1 ; EVALUE=2e-34 ;
Q/S_length_ratio=0.658"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.832 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=3e-34 ;
Q/S_length_ratio=0.815"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DQ81|L0DQ81_SINAD ;
ALN/Q_length_ratio=0.545 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7511 PE=4 SV=1 ; EVALUE=4e-34 ;
Q/S_length_ratio=0.455"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.656 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=1e-33 ;
Q/S_length_ratio=0.702"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DPR4|L0DPR4_SINAD ;
ALN/Q_length_ratio=0.774 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6601 PE=4 SV=1 ; EVALUE=3e-33 ;
Q/S_length_ratio=0.649"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DHB8|L0DHB8_SINAD ;
ALN/Q_length_ratio=0.667 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3834 PE=4 SV=1 ; EVALUE=3e-33 ;
Q/S_length_ratio=0.709"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|A0A090KPX2|A0A090KPX2_9BACT ;
ALN/Q_length_ratio=0.819 ; DESCRIPTION=Uncultured
bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1 ; EVALUE=2e-32 ;
Q/S_length_ratio=0.339"
/note="Pfam_scan:hit_1 (40..107);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:68; HMM_Length:71;
EVALUE:2.4e-08; BITSCORE: 33.4"
/note="Pfam_scan:hit_2 (130..182);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:48; HMM_Length:54;
EVALUE:1.3e-10; BITSCORE: 40.5"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MLRRFVHLLT ATISEVGEVP DADLVRQFTQ DRNAAAFELL VRRHADTVWA PCRRLLRSDA
61 DAEDAFQATF LVLARKAGAI RGACVGAWLH QVAVRVALKL RAKTARILTA TSEHLSTLLA
121 SGMPDPDVPG IVHEELARLP DRYRLPVVLC DLEGRTHVEA AAALRCPVGT VAGRLSRARA
181 ILRDRLVRRG VAPVLVLSAS VAPVSVVRAA AALAGGSSGV SPVVSSLTEG VLCAMRTPTL
241 KWKLVAGLLG LAGAAITAYG SLPSAQTPMP PTALPSPEEP PKKAEPGQKA KSTEELVKDA
301 KARFAEFERL RLLLIEAELL NERRDIYVAG MPGKEDEAAL TKKVAELEQK IEALKPRQKY
361 YADLFGISPS SKLPEGIKKA KEEMTKLETP KSP
//