LOCUS VTR91758.1 714 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_5383 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2: DUF4177: Secretin_N protein.
ACCESSION LR593886-1059
PROTEIN_ID VTR91758.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_59560"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.289 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=6e-41 ;
Q/S_length_ratio=2.238"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.555 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=4e-40 ;
Q/S_length_ratio=1.684"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DFV7|L0DFV7_SINAD ;
ALN/Q_length_ratio=0.254 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3442 PE=4 SV=1 ; EVALUE=2e-37 ;
Q/S_length_ratio=0.582"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.427 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=4e-36 ;
Q/S_length_ratio=0.648"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.255 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=5e-36 ;
Q/S_length_ratio=1.275"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DPR4|L0DPR4_SINAD ;
ALN/Q_length_ratio=0.262 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6601 PE=4 SV=1 ; EVALUE=9e-36 ;
Q/S_length_ratio=1.178"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DIU5|L0DIU5_SINAD ;
ALN/Q_length_ratio=0.347 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4592 PE=4 SV=1 ; EVALUE=1e-34 ;
Q/S_length_ratio=1.248"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DHB8|L0DHB8_SINAD ;
ALN/Q_length_ratio=0.375 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3834 PE=4 SV=1 ; EVALUE=6e-34 ;
Q/S_length_ratio=1.289"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DR85|L0DR85_SINAD ;
ALN/Q_length_ratio=0.319 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7453 PE=4 SV=1 ; EVALUE=2e-33 ;
Q/S_length_ratio=1.196"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.353 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=2e-33 ;
Q/S_length_ratio=1.163"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DA12|L0DA12_SINAD ;
ALN/Q_length_ratio=0.367 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_1318 PE=4 SV=1 ; EVALUE=3e-33 ;
Q/S_length_ratio=0.986"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DIK4|L0DIK4_SINAD ;
ALN/Q_length_ratio=0.259 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4459 PE=4 SV=1 ; EVALUE=1e-32 ;
Q/S_length_ratio=0.729"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0D7L2|L0D7L2_SINAD ;
ALN/Q_length_ratio=0.294 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0185 PE=4 SV=1 ; EVALUE=2e-32 ;
Q/S_length_ratio=1.425"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DHG5|L0DHG5_SINAD ;
ALN/Q_length_ratio=0.389 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3888 PE=4 SV=1 ; EVALUE=2e-32 ;
Q/S_length_ratio=1.017"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DQE6|L0DQE6_SINAD ;
ALN/Q_length_ratio=0.248 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7079 PE=4 SV=1 ; EVALUE=4e-32 ;
Q/S_length_ratio=0.749"
/note="Pfam_scan:hit_1 (37..106);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:69; HMM_Length:71;
EVALUE:3.9e-13; BITSCORE: 48.7"
/note="Pfam_scan:hit_2 (131..183);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:50; HMM_Length:54;
EVALUE:1.1e-10; BITSCORE: 40.7"
/note="Pfam_scan:hit_3 (340..387); Pfam:PF13783.1:DUF4177;
Pfam_type:Family;HMM_aln_Length:57; HMM_Length:61;
EVALUE:1.2e-06; BITSCORE: 28.0"
/note="Pfam_scan:hit_4 (652..710);
Pfam:PF03958.12:Secretin_N;
Pfam_type:Domain;HMM_aln_Length:76; HMM_Length:82;
EVALUE:3.7e-13; BITSCORE: 49.4"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MTTLLHAVAR RAEAITPDAD LLARFTRDRD HAAFEELVRR HGPLVWAVCR HMLPDHADAE
61 DAFQAVFLAL VRSAATIRDG RTVPAWLHGV AVRVATRAKR SGARRRQREQ IASHAESERP
121 VASASWDALV RSVHEEVQQL PEVERTAFVM CDLEGVSQPD AAARLGWPLG SLSGRLCKAR
181 QRLMERLSAR GVAPAVAIGI GVTASTTGAV PGRLFNVVRA FPSTPTAASK AASVLARGFT
241 EGITMRVKLM VASVVITTLG LTSGAALLSK ADAQPPGGGT GTGSSSGTSA TTTGGSTSTG
301 SSGSSTTTSS TSSADDSGTN SGTTASSNGS GRTNTAPSPA WEYKFVDVRS DRKAFESAIT
361 QHGKDGWEFC SSERFGPAEL VLVFKKSKGG ASGFNPFGGF GGGGGGSFGG GGVGQPGGGG
421 FPGGGGVGGG GGFPGGGGFG GSGSNFPGGG GGSGGFGGNF GGGGGTSGGP GGGGNRGASA
481 DPERSWAMLQ RLTNSTGDTV DLGAIPPQTR DFLKSMTERT GGVPLPEKGT MTKAEYLKYH
541 ARSEAARGAA PGGSGGSGNS SAGGLHGSSS SDSAAVALKN ASADGVVKVI QKEFEKKGLR
601 IAAERTTNAV LIVASAPDDL KSALKRIAEL DAPAAPRVSG GSGTPGKPDA FVNVFTLKHA
661 KAEELVTVLQ KLFPNGTMTA DARTNSIVLS GDTETLDTAR ALIARLDMEV VKPK
//