LOCUS VTR91453.1 186 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase sigma factor y : RNA
polymerase sigma factor Y OS=uncultured planctomycete
GN=HGMM_F33C03C33 PE=4 SV=1: Sigma70_r2 protein.
ACCESSION LR593886-754
PROTEIN_ID VTR91453.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_62610"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|H5SIK4|H5SIK4_9BACT ;
ALN/Q_length_ratio=1.038 ; DESCRIPTION=RNA polymerase
sigma factor Y OS=uncultured planctomycete
GN=HGMM_F33C03C33 PE=4 SV=1 ; EVALUE=1e-27 ;
Q/S_length_ratio=0.886"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|D5ST62|D5ST62_PLAL2 ;
ALN/Q_length_ratio=1.022 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Planctomyces limnophilus
(strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290)
GN=Plim_0986 PE=4 SV=1 ; EVALUE=1e-26 ;
Q/S_length_ratio=0.921"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|M5S5S2|M5S5S2_9PLAN ;
ALN/Q_length_ratio=0.989 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Rhodopirellula europaea
SH398 GN=RESH_02679 PE=4 SV=1 ; EVALUE=2e-26 ;
Q/S_length_ratio=0.877"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|M2ALH1|M2ALH1_9PLAN ;
ALN/Q_length_ratio=0.989 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula
europaea 6C GN=RE6C_05745 PE=4 SV=1 ; EVALUE=2e-26 ;
Q/S_length_ratio=0.954"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|M5RQ59|M5RQ59_9PLAN ;
ALN/Q_length_ratio=0.984 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula
maiorica SM1 GN=RMSM_06978 PE=4 SV=1 ; EVALUE=4e-26 ;
Q/S_length_ratio=0.877"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|F2AR27|F2AR27_RHOBT ;
ALN/Q_length_ratio=0.989 ; DESCRIPTION=RNA polymerase
sigma factor Y OS=Rhodopirellula baltica WH47
GN=RBWH47_01148 PE=4 SV=1 ; EVALUE=1e-25 ;
Q/S_length_ratio=0.954"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|M5T0G9|M5T0G9_9PLAN ;
ALN/Q_length_ratio=1.038 ; DESCRIPTION=RNA polymerase
sigma factor Y OS=Rhodopirellula sp. SWK7 GN=RRSWK_04916
PE=4 SV=1 ; EVALUE=2e-25 ; Q/S_length_ratio=0.954"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|Q7UN42|Q7UN42_RHOBA ;
ALN/Q_length_ratio=0.962 ; DESCRIPTION=Probable RNA
polymerase sigma factor nccH OS=Rhodopirellula baltica
(strain SH1) GN=nccH PE=4 SV=1 ; EVALUE=2e-25 ;
Q/S_length_ratio=1.028"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L7CMG6|L7CMG6_RHOBT ;
ALN/Q_length_ratio=0.989 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula
baltica SWK14 GN=RBSWK_01838 PE=4 SV=1 ; EVALUE=5e-25 ;
Q/S_length_ratio=0.954"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|M5UII0|M5UII0_9PLAN ;
ALN/Q_length_ratio=0.962 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula
sallentina SM41 GN=RSSM_00910 PE=4 SV=1 ; EVALUE=6e-25 ;
Q/S_length_ratio=0.907"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|K5D0M6|K5D0M6_RHOBT ;
ALN/Q_length_ratio=0.989 ; DESCRIPTION=Protein containing
RNA polymerase sigma-70 domain protein OS=Rhodopirellula
baltica SH28 GN=RBSH_04739 PE=4 SV=1 ; EVALUE=6e-25 ;
Q/S_length_ratio=0.954"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M2AYP9|M2AYP9_9PLAN ;
ALN/Q_length_ratio=1.038 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula
europaea 6C GN=RE6C_01458 PE=4 SV=1 ; EVALUE=2e-24 ;
Q/S_length_ratio=0.916"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|D2R6Z9|D2R6Z9_PIRSD ;
ALN/Q_length_ratio=1.038 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_4560
PE=4 SV=1 ; EVALUE=3e-24 ; Q/S_length_ratio=0.930"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|M5SU82|M5SU82_9PLAN ;
ALN/Q_length_ratio=0.962 ; DESCRIPTION=RNA polymerase
sigma factor Y OS=Rhodopirellula sp. SWK7 GN=RRSWK_07091
PE=4 SV=1 ; EVALUE=1e-23 ; Q/S_length_ratio=1.011"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|K5D9M4|K5D9M4_RHOBT ;
ALN/Q_length_ratio=1.038 ; DESCRIPTION=RNA polymerase
sigma factor Y OS=Rhodopirellula baltica SH28
GN=RBSH_01246 PE=4 SV=1 ; EVALUE=5e-22 ;
Q/S_length_ratio=0.890"
/note="Pfam_scan:hit_1 (24..93);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:66; HMM_Length:71;
EVALUE:5e-12; BITSCORE: 45.2"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MQTTSLTLLM RLCRPDEPDA WDRFVRLYST GIYSWVRQLG LRHDVAADIV QDVFVALVQK
61 LPEFRHQGGR SFRGWLWAIT RNKCREWARR REFVSVPAAS LDEFEGKVDE PFWEDEFRRH
121 LVGQIASVIE ADYPPEVWRA FWEHVVEGKP ASRVAGELGI NLWAVYTAKA RIVARLHEEF
181 ADLVAD
//