LOCUS VTR91453.1 186 aa PRT BCT 03-FEB-2020 DEFINITION Gemmata massiliana rna polymerase sigma factor y : RNA polymerase sigma factor Y OS=uncultured planctomycete GN=HGMM_F33C03C33 PE=4 SV=1: Sigma70_r2 protein. ACCESSION LR593886-754 PROTEIN_ID VTR91453.1 SOURCE Gemmata massiliana ORGANISM Gemmata massiliana Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae; Gemmata. REFERENCE 1 AUTHORS CONSRTM Science for Life Laboratories JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution, Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden FEATURES Qualifiers source /organism="Gemmata massiliana" /chromosome="1" /isolate="Soil9" /mol_type="genomic DNA" /isolation_source="soil" /db_xref="taxon:1210884" protein /locus_tag="SOIL9_62610" /note="BLAST_uniprot:hit_1 ; ACCESSION=tr|H5SIK4|H5SIK4_9BACT ; ALN/Q_length_ratio=1.038 ; DESCRIPTION=RNA polymerase sigma factor Y OS=uncultured planctomycete GN=HGMM_F33C03C33 PE=4 SV=1 ; EVALUE=1e-27 ; Q/S_length_ratio=0.886" /note="BLAST_uniprot:hit_2 ; ACCESSION=tr|D5ST62|D5ST62_PLAL2 ; ALN/Q_length_ratio=1.022 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=Plim_0986 PE=4 SV=1 ; EVALUE=1e-26 ; Q/S_length_ratio=0.921" /note="BLAST_uniprot:hit_4 ; ACCESSION=tr|M5S5S2|M5S5S2_9PLAN ; ALN/Q_length_ratio=0.989 ; DESCRIPTION=RNA polymerase, sigma-24 subunit, ECF subfamily OS=Rhodopirellula europaea SH398 GN=RESH_02679 PE=4 SV=1 ; EVALUE=2e-26 ; Q/S_length_ratio=0.877" /note="BLAST_uniprot:hit_3 ; ACCESSION=tr|M2ALH1|M2ALH1_9PLAN ; ALN/Q_length_ratio=0.989 ; DESCRIPTION=Extracytoplasmic function alternative sigma factor OS=Rhodopirellula europaea 6C GN=RE6C_05745 PE=4 SV=1 ; EVALUE=2e-26 ; Q/S_length_ratio=0.954" /note="BLAST_uniprot:hit_5 ; ACCESSION=tr|M5RQ59|M5RQ59_9PLAN ; ALN/Q_length_ratio=0.984 ; DESCRIPTION=Extracytoplasmic function alternative sigma factor OS=Rhodopirellula maiorica SM1 GN=RMSM_06978 PE=4 SV=1 ; EVALUE=4e-26 ; Q/S_length_ratio=0.877" /note="BLAST_uniprot:hit_6 ; ACCESSION=tr|F2AR27|F2AR27_RHOBT ; ALN/Q_length_ratio=0.989 ; DESCRIPTION=RNA polymerase sigma factor Y OS=Rhodopirellula baltica WH47 GN=RBWH47_01148 PE=4 SV=1 ; EVALUE=1e-25 ; Q/S_length_ratio=0.954" /note="BLAST_uniprot:hit_7 ; ACCESSION=tr|M5T0G9|M5T0G9_9PLAN ; ALN/Q_length_ratio=1.038 ; DESCRIPTION=RNA polymerase sigma factor Y OS=Rhodopirellula sp. SWK7 GN=RRSWK_04916 PE=4 SV=1 ; EVALUE=2e-25 ; Q/S_length_ratio=0.954" /note="BLAST_uniprot:hit_8 ; ACCESSION=tr|Q7UN42|Q7UN42_RHOBA ; ALN/Q_length_ratio=0.962 ; DESCRIPTION=Probable RNA polymerase sigma factor nccH OS=Rhodopirellula baltica (strain SH1) GN=nccH PE=4 SV=1 ; EVALUE=2e-25 ; Q/S_length_ratio=1.028" /note="BLAST_uniprot:hit_9 ; ACCESSION=tr|L7CMG6|L7CMG6_RHOBT ; ALN/Q_length_ratio=0.989 ; DESCRIPTION=Extracytoplasmic function alternative sigma factor OS=Rhodopirellula baltica SWK14 GN=RBSWK_01838 PE=4 SV=1 ; EVALUE=5e-25 ; Q/S_length_ratio=0.954" /note="BLAST_uniprot:hit_10 ; ACCESSION=tr|M5UII0|M5UII0_9PLAN ; ALN/Q_length_ratio=0.962 ; DESCRIPTION=Extracytoplasmic function alternative sigma factor OS=Rhodopirellula sallentina SM41 GN=RSSM_00910 PE=4 SV=1 ; EVALUE=6e-25 ; Q/S_length_ratio=0.907" /note="BLAST_uniprot:hit_11 ; ACCESSION=tr|K5D0M6|K5D0M6_RHOBT ; ALN/Q_length_ratio=0.989 ; DESCRIPTION=Protein containing RNA polymerase sigma-70 domain protein OS=Rhodopirellula baltica SH28 GN=RBSH_04739 PE=4 SV=1 ; EVALUE=6e-25 ; Q/S_length_ratio=0.954" /note="BLAST_uniprot:hit_12 ; ACCESSION=tr|M2AYP9|M2AYP9_9PLAN ; ALN/Q_length_ratio=1.038 ; DESCRIPTION=Extracytoplasmic function alternative sigma factor OS=Rhodopirellula europaea 6C GN=RE6C_01458 PE=4 SV=1 ; EVALUE=2e-24 ; Q/S_length_ratio=0.916" /note="BLAST_uniprot:hit_13 ; ACCESSION=tr|D2R6Z9|D2R6Z9_PIRSD ; ALN/Q_length_ratio=1.038 ; DESCRIPTION=RNA polymerase, sigma-24 subunit, ECF subfamily OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_4560 PE=4 SV=1 ; EVALUE=3e-24 ; Q/S_length_ratio=0.930" /note="BLAST_uniprot:hit_14 ; ACCESSION=tr|M5SU82|M5SU82_9PLAN ; ALN/Q_length_ratio=0.962 ; DESCRIPTION=RNA polymerase sigma factor Y OS=Rhodopirellula sp. SWK7 GN=RRSWK_07091 PE=4 SV=1 ; EVALUE=1e-23 ; Q/S_length_ratio=1.011" /note="BLAST_uniprot:hit_15 ; ACCESSION=tr|K5D9M4|K5D9M4_RHOBT ; ALN/Q_length_ratio=1.038 ; DESCRIPTION=RNA polymerase sigma factor Y OS=Rhodopirellula baltica SH28 GN=RBSH_01246 PE=4 SV=1 ; EVALUE=5e-22 ; Q/S_length_ratio=0.890" /note="Pfam_scan:hit_1 (24..93); Pfam:PF04542.9:Sigma70_r2; Pfam_type:Domain;HMM_aln_Length:66; HMM_Length:71; EVALUE:5e-12; BITSCORE: 45.2" /note="GO_domain:GO:0003677" /note="GO_domain:GO:0001071" /note="GO_domain:GO:0000988" /note="GO_domain:GO:0034641" /note="GO_domain:GO:0009058" /note="GO_domain:GO:0043234" /note="GO_domain:GO:0005622" BEGIN 1 MQTTSLTLLM RLCRPDEPDA WDRFVRLYST GIYSWVRQLG LRHDVAADIV QDVFVALVQK 61 LPEFRHQGGR SFRGWLWAIT RNKCREWARR REFVSVPAAS LDEFEGKVDE PFWEDEFRRH 121 LVGQIASVIE ADYPPEVWRA FWEHVVEGKP ASRVAGELGI NLWAVYTAKA RIVARLHEEF 181 ADLVAD //