LOCUS VTR91310.1 1169 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana dna polymerase iii subunit alpha :
DNA-directed DNA polymerase OS=Rhodopirellula baltica
(strain SH1) GN=dnaE PE=4 SV=1: PHP: DNA_pol3_alpha: HHH_6:
tRNA_anti-codon protein.
ACCESSION LR593886-611
PROTEIN_ID VTR91310.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_64040"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L7CC63|L7CC63_RHOBT ;
ALN/Q_length_ratio=0.997 ; DESCRIPTION=DNA-directed DNA
polymerase OS=Rhodopirellula baltica SWK14 GN=RBSWK_04646
PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.975"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|M2AT75|M2AT75_9PLAN ;
ALN/Q_length_ratio=0.997 ; DESCRIPTION=DNA-directed DNA
polymerase OS=Rhodopirellula europaea 6C GN=RE6C_06055
PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.975"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|A3ZMH5|A3ZMH5_9PLAN ;
ALN/Q_length_ratio=0.993 ; DESCRIPTION=DNA-directed DNA
polymerase OS=Blastopirellula marina DSM 3645
GN=DSM3645_00500 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.990"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|E8QWL9|E8QWL9_ISOPI ;
ALN/Q_length_ratio=1.032 ; DESCRIPTION=DNA-directed DNA
polymerase OS=Isosphaera pallida (strain ATCC 43644 / DSM
9630 / IS1B) GN=Isop_1325 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.940"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DA50|L0DA50_SINAD ;
ALN/Q_length_ratio=0.998 ; DESCRIPTION=DNA-directed DNA
polymerase OS=Singulisphaera acidiphila (strain ATCC
BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_1355
PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.969"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|A6CCN9|A6CCN9_9PLAN ;
ALN/Q_length_ratio=0.974 ; DESCRIPTION=DNA-directed DNA
polymerase OS=Planctomyces maris DSM 8797 GN=PM8797T_32215
PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.013"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|K5DA76|K5DA76_RHOBT ;
ALN/Q_length_ratio=0.997 ; DESCRIPTION=DNA-directed DNA
polymerase OS=Rhodopirellula baltica SH28 GN=RBSH_05333
PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.975"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|M5RJ37|M5RJ37_9PLAN ;
ALN/Q_length_ratio=0.994 ; DESCRIPTION=DNA-directed DNA
polymerase OS=Rhodopirellula maiorica SM1 GN=RMSM_03872
PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.981"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|D2R3M9|D2R3M9_PIRSD ;
ALN/Q_length_ratio=0.953 ; DESCRIPTION=DNA-directed DNA
polymerase OS=Pirellula staleyi (strain ATCC 27377 / DSM
6068 / ICPB 4128) GN=Psta_2313 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.981"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|M5TUS5|M5TUS5_9PLAN ;
ALN/Q_length_ratio=0.997 ; DESCRIPTION=DNA-directed DNA
polymerase OS=Rhodopirellula sallentina SM41 GN=RSSM_05777
PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.976"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|M5SLV1|M5SLV1_9PLAN ;
ALN/Q_length_ratio=0.997 ; DESCRIPTION=DNA-directed DNA
polymerase OS=Rhodopirellula europaea SH398 GN=RESH_02216
PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.975"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|F0SRK7|F0SRK7_PLABD ;
ALN/Q_length_ratio=0.949 ; DESCRIPTION=DNA-directed DNA
polymerase OS=Planctomyces brasiliensis (strain ATCC 49424
/ DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448)
GN=Plabr_1519 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.997"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|D5SUP7|D5SUP7_PLAL2 ;
ALN/Q_length_ratio=0.926 ; DESCRIPTION=DNA-directed DNA
polymerase OS=Planctomyces limnophilus (strain ATCC 43296
/ DSM 3776 / IFAM 1008 / 290) GN=Plim_1265 PE=4 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=0.994"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|M5SUZ5|M5SUZ5_9PLAN ;
ALN/Q_length_ratio=0.997 ; DESCRIPTION=DNA-directed DNA
polymerase OS=Rhodopirellula sp. SWK7 GN=RRSWK_06716 PE=4
SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.976"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|Q7UUS6|Q7UUS6_RHOBA ;
ALN/Q_length_ratio=0.997 ; DESCRIPTION=DNA-directed DNA
polymerase OS=Rhodopirellula baltica (strain SH1) GN=dnaE
PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.975"
/note="Pfam_scan:hit_1 (6..194); Pfam:PF02811.14:PHP;
Pfam_type:Family;HMM_aln_Length:168; HMM_Length:175;
EVALUE:2.1e-47; BITSCORE: 161.1"
/note="Pfam_scan:hit_2 (300..736);
Pfam:PF07733.7:DNA_pol3_alpha;
Pfam_type:Family;HMM_aln_Length:423; HMM_Length:426;
EVALUE:3.6e-158; BITSCORE: 526.4"
/note="Pfam_scan:hit_3 (812..901); Pfam:PF14579.1:HHH_6;
Pfam_type:Domain;HMM_aln_Length:85; HMM_Length:90;
EVALUE:1.3e-23; BITSCORE: 82.8"
/note="Pfam_scan:hit_4 (998..1085);
Pfam:PF01336.20:tRNA_anti-codon;
Pfam_type:Domain;HMM_aln_Length:61; HMM_Length:75;
EVALUE:1.3e-05; BITSCORE: 24.9"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0016779"
/note="GO_domain:GO:0004518"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0006259"
/note="GO_domain:GO:0005622"
/note="Enzyme_Code:EC:3.1"
/note="Enzyme_Code:EC:2.7.7.7"
BEGIN
1 MARCFCHLHL HTHYSMLDGF NRIQPLVKQT KELGMNAVAI TDHGNLYGAI EFYMECKKGG
61 IKPIIGYEAY LAPGSRLDRD SKGELGFSTH LTLLAKNEAG LKNLIKLSSI AYLEGFYRNP
121 RIDKEILEEY HEGIMCLSGC LAGEFNQYII KDKPHEAEKT AKWFRKVFGE DFYIEIQNNG
181 IGLQDQCTPV AADIANKLGV PLVATADAHY LCSEDAQAHD VLFCINTRQM HDPRKKKYPE
241 ERMANPYFVR SPEDMYRLFP NHQDAVARSQ EIADKVNIDI DFKKRYFPVF VTPDEKTPDA
301 YLRELCEQGM YERYGAEPSE AVRKRLDHEL GIINKMGFST YFLVVWDFVR FAREEGIPCT
361 ARGSGCGAIV CYLLYMSHVC PIEYDLLFER FLDPNRSEAP DIDIDFCQER RELVIDYVKR
421 KYGTESVAQI GTFGTLAAKA ALKDVGRVLG QAPERMNALC KLVPMKGAIA KSLQEALDES
481 PDFKREYDQD PAIKQVVDIA LKLEGANRNV GTHAAGVVIA NGPVTNYVPV QRPPKKGDDN
541 SGDTTTMTTQ WEMGILEKVG LLKMDFLGLR NLTVLDNCVK LIQKTRKVTV EPTKFPLTDP
601 DTYKLLQRGD AKGVFQLESE GIRELLKRMK PDNIRDLIAV LALYRPGPIE GGMVDEYVEC
661 KNGRKKPEYP HPIVEEVLTE TYGVMVYQEQ IMRMLNRMGG IELAKAYACI KAISKKNFEI
721 INARKADFVA GATQRDMSAE KAEEIFDLIV KFGGYGFNKS HTAAYAQIGF QTAYLKTHYT
781 AEYMAALLSS EIDDGNKRDV FIDHISDARK LGIDVLPPDV NRGMADFDVQ HNRIIFGLTA
841 IKGVGRGAAL EVVRARTEGG KFKDLFDFCE RVDRRILAKA AAECMIQAGA FDVFGKRSAQ
901 FASVAKAYAV ADQRAAEKRK GQTGLFDDVE EEANSGPTAQ GLLDTDEWSE TERLKREKEV
961 LGFYISSHPL AQHDEQLRRF RTHDCVMLTK GSKNGTEARI GGMITNLDVR TANKGRNIGK
1021 KYAMFRIEDF TDSVRCILWS DEYSRFRDQI NSDTVAIFEG VLNWAPDRAE PDFAIKKIIT
1081 LDEARAEFTK SMVLKLAYTE DDETLRKLEA VSLILKRNRG QCPVYMSVRD PNGKQVQLKF
1141 NDDFRINPAS IKLEELEMLL GQGAIIFSR
//