LOCUS VTR91183.1 241 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase sigma-e factor-like
protein : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_1390 PE=4 SV=1: Sigma70_r4_2
protein.
ACCESSION LR593886-484
PROTEIN_ID VTR91183.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_65310"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DAB2|L0DAB2_SINAD ;
ALN/Q_length_ratio=0.772 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_1390 PE=4 SV=1 ; EVALUE=5e-53 ;
Q/S_length_ratio=1.255"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|D2R9C0|D2R9C0_PIRSD ;
ALN/Q_length_ratio=0.755 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_3005
PE=4 SV=1 ; EVALUE=8e-49 ; Q/S_length_ratio=1.255"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|E8QXI6|E8QXI6_ISOPI ;
ALN/Q_length_ratio=0.772 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Isosphaera pallida
(strain ATCC 43644 / DSM 9630 / IS1B) GN=Isop_2461 PE=4
SV=1 ; EVALUE=3e-48 ; Q/S_length_ratio=1.262"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|F0SLL7|F0SLL7_PLABD ;
ALN/Q_length_ratio=0.776 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Planctomyces
brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 /
NBRC 103401 / IFAM 1448) GN=Plabr_0070 PE=4 SV=1 ;
EVALUE=6e-47 ; Q/S_length_ratio=1.262"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|A6C164|A6C164_9PLAN ;
ALN/Q_length_ratio=0.751 ; DESCRIPTION=Uncharacterized
protein OS=Planctomyces maris DSM 8797 GN=PM8797T_05780
PE=4 SV=1 ; EVALUE=4e-44 ; Q/S_length_ratio=1.296"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|A4A2W5|A4A2W5_9PLAN ;
ALN/Q_length_ratio=0.784 ; DESCRIPTION=RNA polymerase
sigma-E factor-like protein OS=Blastopirellula marina DSM
3645 GN=DSM3645_17956 PE=4 SV=1 ; EVALUE=2e-41 ;
Q/S_length_ratio=1.249"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|D5SQH8|D5SQH8_PLAL2 ;
ALN/Q_length_ratio=0.788 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Planctomyces limnophilus
(strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290)
GN=Plim_2616 PE=4 SV=1 ; EVALUE=1e-38 ;
Q/S_length_ratio=1.223"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|Q7UR06|Q7UR06_RHOBA ;
ALN/Q_length_ratio=0.842 ; DESCRIPTION=Similar to RNA
polymerase sigma-E factor OS=Rhodopirellula baltica
(strain SH1) GN=RB5968 PE=4 SV=1 ; EVALUE=3e-35 ;
Q/S_length_ratio=1.164"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|F2AKT2|F2AKT2_RHOBT ;
ALN/Q_length_ratio=0.842 ; DESCRIPTION=RNA polymerase
sigma-E factor-like protein OS=Rhodopirellula baltica WH47
GN=RBWH47_01496 PE=4 SV=1 ; EVALUE=3e-35 ;
Q/S_length_ratio=1.164"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|K5C755|K5C755_RHOBT ;
ALN/Q_length_ratio=0.842 ; DESCRIPTION=RNA polymerase
sigma-E factor-like protein OS=Rhodopirellula baltica SH28
GN=RBSH_06098 PE=4 SV=1 ; EVALUE=3e-35 ;
Q/S_length_ratio=1.164"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|M2BAV0|M2BAV0_9PLAN ;
ALN/Q_length_ratio=0.826 ; DESCRIPTION=RNA polymerase
sigma-E factor-like protein OS=Rhodopirellula europaea 6C
GN=RE6C_00431 PE=4 SV=1 ; EVALUE=3e-35 ;
Q/S_length_ratio=1.164"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L7CPZ4|L7CPZ4_RHOBT ;
ALN/Q_length_ratio=0.842 ; DESCRIPTION=RNA polymerase
sigma-E factor-like protein OS=Rhodopirellula baltica
SWK14 GN=RBSWK_00072 PE=4 SV=1 ; EVALUE=9e-35 ;
Q/S_length_ratio=1.164"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|M5S8L8|M5S8L8_9PLAN ;
ALN/Q_length_ratio=0.826 ; DESCRIPTION=RNA polymerase
sigma-E factor-like protein OS=Rhodopirellula europaea
SH398 GN=RESH_01398 PE=4 SV=1 ; EVALUE=1e-34 ;
Q/S_length_ratio=1.164"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|X0SNG1|X0SNG1_9ZZZZ ;
ALN/Q_length_ratio=0.643 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S01H1_L04231 OS=marine sediment
metagenome GN=S01H1_11847 PE=4 SV=1 ; EVALUE=1e-33 ;
Q/S_length_ratio=1.516"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|M5RB69|M5RB69_9PLAN ;
ALN/Q_length_ratio=0.660 ; DESCRIPTION=RNA polymerase
sigma-E factor-like protein OS=Rhodopirellula maiorica SM1
GN=RMSM_06445 PE=4 SV=1 ; EVALUE=1e-29 ;
Q/S_length_ratio=1.516"
/note="Pfam_scan:hit_1 (136..189);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:52; HMM_Length:54;
EVALUE:2e-13; BITSCORE: 49.5"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MDADTPFTAV DRDLLKRCLN REPGSWNDFV DRFLSLIYHT IGYTAHLRSA RVGPEDVEDI
61 AAEVLLQIVA NNFKVLREFR KQSSLATYLA VVARRICVHE LVRRQKVKDA IKRGESRLAE
121 PEPDDAPAAQ KGMESLEEVE KLLRRLSGRE KEIVRLYYLE GRTYEEISTE TDVPVNTIGA
181 VLSRARKKLR ETASAGSSAM PDPRTVKVPK APPIATPKPP KAPKSKSKME PIPEHRTEAS
241 E
//