LOCUS VTR91070.1 198 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase sigma factor sigw :
RNA polymerase sigma factor SigW OS=Candidatus Entotheonella
sp. TSY1 GN=ETSY1_42065 PE=4 SV=1: Sigma70_r2: Sigma70_r4_2
protein.
ACCESSION LR593886-371
PROTEIN_ID VTR91070.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_66440"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|W4L3Z8|W4L3Z8_9DELT ;
ALN/Q_length_ratio=0.889 ; DESCRIPTION=RNA polymerase
sigma factor SigW OS=Candidatus Entotheonella sp. TSY1
GN=ETSY1_42065 PE=4 SV=1 ; EVALUE=3e-57 ;
Q/S_length_ratio=1.082"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|W4M2J2|W4M2J2_9DELT ;
ALN/Q_length_ratio=0.889 ; DESCRIPTION=RNA polymerase
sigma factor SigW OS=Candidatus Entotheonella sp. TSY2
GN=ETSY2_29125 PE=4 SV=1 ; EVALUE=2e-53 ;
Q/S_length_ratio=1.082"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|A3ZXQ9|A3ZXQ9_9PLAN ;
ALN/Q_length_ratio=0.874 ; DESCRIPTION=RNA polymerase
sigma factor sigW OS=Blastopirellula marina DSM 3645
GN=DSM3645_07410 PE=4 SV=1 ; EVALUE=4e-52 ;
Q/S_length_ratio=1.042"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|D5SRL3|D5SRL3_PLAL2 ;
ALN/Q_length_ratio=0.864 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Planctomyces limnophilus
(strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290)
GN=Plim_0700 PE=4 SV=1 ; EVALUE=8e-52 ;
Q/S_length_ratio=1.076"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DN34|L0DN34_SINAD ;
ALN/Q_length_ratio=0.894 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6587 PE=4 SV=1 ; EVALUE=1e-50 ;
Q/S_length_ratio=0.880"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|E8R320|E8R320_ISOPI ;
ALN/Q_length_ratio=0.929 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Isosphaera pallida
(strain ATCC 43644 / DSM 9630 / IS1B) GN=Isop_0935 PE=4
SV=1 ; EVALUE=3e-50 ; Q/S_length_ratio=0.783"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|D2R4A2|D2R4A2_PIRSD ;
ALN/Q_length_ratio=0.884 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_0563
PE=4 SV=1 ; EVALUE=5e-50 ; Q/S_length_ratio=1.048"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|F0SR24|F0SR24_PLABD ;
ALN/Q_length_ratio=0.924 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Planctomyces
brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 /
NBRC 103401 / IFAM 1448) GN=Plabr_3674 PE=4 SV=1 ;
EVALUE=7e-47 ; Q/S_length_ratio=0.943"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|A6C3H6|A6C3H6_9PLAN ;
ALN/Q_length_ratio=0.894 ; DESCRIPTION=RNA polymerase
sigma factor sigW OS=Planctomyces maris DSM 8797
GN=PM8797T_26425 PE=4 SV=1 ; EVALUE=4e-44 ;
Q/S_length_ratio=1.082"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|M5T3Q5|M5T3Q5_9PLAN ;
ALN/Q_length_ratio=0.884 ; DESCRIPTION=RNA polymerase
sigma factor sigW OS=Rhodopirellula sp. SWK7
GN=RRSWK_03495 PE=4 SV=1 ; EVALUE=1e-43 ;
Q/S_length_ratio=0.733"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|M5RLC5|M5RLC5_9PLAN ;
ALN/Q_length_ratio=0.914 ; DESCRIPTION=RNA polymerase
sigma factor sigW OS=Rhodopirellula maiorica SM1
GN=RMSM_03078 PE=4 SV=1 ; EVALUE=4e-43 ;
Q/S_length_ratio=0.839"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M5TTN8|M5TTN8_9PLAN ;
ALN/Q_length_ratio=0.854 ; DESCRIPTION=RNA polymerase
sigma factor sigW OS=Rhodopirellula sallentina SM41
GN=RSSM_06080 PE=4 SV=1 ; EVALUE=6e-43 ;
Q/S_length_ratio=0.710"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L7CA32|L7CA32_RHOBT ;
ALN/Q_length_ratio=0.894 ; DESCRIPTION=RNA polymerase
sigma factor sigW OS=Rhodopirellula baltica SWK14
GN=RBSWK_05409 PE=4 SV=1 ; EVALUE=1e-42 ;
Q/S_length_ratio=0.789"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|Q7UMI2|Q7UMI2_RHOBA ;
ALN/Q_length_ratio=0.894 ; DESCRIPTION=RNA polymerase
sigma factor sigW OS=Rhodopirellula baltica (strain SH1)
GN=sigW PE=4 SV=1 ; EVALUE=1e-42 ; Q/S_length_ratio=0.789"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|F2ALY6|F2ALY6_RHOBT ;
ALN/Q_length_ratio=0.894 ; DESCRIPTION=RNA polymerase
sigma factor sigW OS=Rhodopirellula baltica WH47
GN=RBWH47_04787 PE=4 SV=1 ; EVALUE=1e-42 ;
Q/S_length_ratio=0.789"
/note="Pfam_scan:hit_1 (24..91);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:68; HMM_Length:71;
EVALUE:1.5e-12; BITSCORE: 46.9"
/note="Pfam_scan:hit_2 (120..173);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:51; HMM_Length:54;
EVALUE:1.6e-09; BITSCORE: 37.1"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MSWTEITVLV EQAKTGDREA YGELVARFQS SVYAMALSRV RDPLEAQELA QDVFVHAMRK
61 LPQLRDPRCF AGWLRRITAR MAINRLTRRG PLFGADTEVL DAVEARTRTA EEQFAVGEAV
121 DQLKEGLAEL KPLDRQTLEA FYIRGRSLKQ IAREFAVPTG TVKRRLHVAR LRLKEVLEGI
181 DPSLAERFAT DGAELAAV
//