LOCUS VTR90994.1 211 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase ecf-type sigma factor
: RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera
acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454
/ MOB10) GN=Sinac_3813 PE=4 SV=1: Sigma70_r2 protein.
ACCESSION LR593886-295
PROTEIN_ID VTR90994.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_67200"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DHA1|L0DHA1_SINAD ;
ALN/Q_length_ratio=0.948 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3813 PE=4 SV=1 ; EVALUE=2e-51 ;
Q/S_length_ratio=1.010"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|D2R7L6|D2R7L6_PIRSD ;
ALN/Q_length_ratio=0.986 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_2776
PE=4 SV=1 ; EVALUE=2e-50 ; Q/S_length_ratio=0.950"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|M5T7D3|M5T7D3_9PLAN ;
ALN/Q_length_ratio=0.967 ; DESCRIPTION=RNA polymerase
ECF-type sigma factor OS=Rhodopirellula sp. SWK7
GN=RRSWK_06026 PE=4 SV=1 ; EVALUE=9e-47 ;
Q/S_length_ratio=0.934"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|M5U6Q5|M5U6Q5_9PLAN ;
ALN/Q_length_ratio=1.009 ; DESCRIPTION=RNA polymerase
ECF-type sigma factor OS=Rhodopirellula sallentina SM41
GN=RSSM_05012 PE=4 SV=1 ; EVALUE=1e-44 ;
Q/S_length_ratio=0.917"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|A3ZM76|A3ZM76_9PLAN ;
ALN/Q_length_ratio=0.986 ; DESCRIPTION=Probable RNA
polymerase ECF-type sigma factor OS=Blastopirellula marina
DSM 3645 GN=DSM3645_00330 PE=4 SV=1 ; EVALUE=7e-44 ;
Q/S_length_ratio=0.981"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|A6C3Z6|A6C3Z6_9PLAN ;
ALN/Q_length_ratio=0.919 ; DESCRIPTION=Probable RNA
polymerase ECF-type sigma factor OS=Planctomyces maris DSM
8797 GN=PM8797T_11059 PE=4 SV=1 ; EVALUE=2e-42 ;
Q/S_length_ratio=0.986"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|M2AW85|M2AW85_9PLAN ;
ALN/Q_length_ratio=0.967 ; DESCRIPTION=RNA polymerase
ECF-type sigma factor OS=Rhodopirellula europaea 6C
GN=RE6C_05471 PE=4 SV=1 ; EVALUE=7e-42 ;
Q/S_length_ratio=0.921"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L7CMI6|L7CMI6_RHOBT ;
ALN/Q_length_ratio=0.991 ; DESCRIPTION=RNA polymerase
ECF-type sigma factor OS=Rhodopirellula baltica SWK14
GN=RBSWK_00612 PE=4 SV=1 ; EVALUE=2e-41 ;
Q/S_length_ratio=0.921"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|M5RRC9|M5RRC9_9PLAN ;
ALN/Q_length_ratio=0.981 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Rhodopirellula maiorica
SM1 GN=RMSM_01305 PE=4 SV=1 ; EVALUE=3e-41 ;
Q/S_length_ratio=0.981"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|M5S4U7|M5S4U7_9PLAN ;
ALN/Q_length_ratio=0.967 ; DESCRIPTION=RNA polymerase
ECF-type sigma factor OS=Rhodopirellula europaea SH398
GN=RESH_02770 PE=4 SV=1 ; EVALUE=3e-41 ;
Q/S_length_ratio=0.921"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|F2B0L6|F2B0L6_RHOBT ;
ALN/Q_length_ratio=0.967 ; DESCRIPTION=RNA polymerase
ECF-type sigma factor OS=Rhodopirellula baltica WH47
GN=RBWH47_00116 PE=4 SV=1 ; EVALUE=3e-41 ;
Q/S_length_ratio=0.921"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|K5CHQ2|K5CHQ2_RHOBT ;
ALN/Q_length_ratio=0.967 ; DESCRIPTION=RNA polymerase
ECF-type sigma factor OS=Rhodopirellula baltica SH28
GN=RBSH_01014 PE=4 SV=1 ; EVALUE=4e-41 ;
Q/S_length_ratio=0.921"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|Q7USG2|Q7USG2_RHOBA ;
ALN/Q_length_ratio=0.967 ; DESCRIPTION=Probable RNA
polymerase ECF-type sigma factor OS=Rhodopirellula baltica
(strain SH1) GN=RB4514 PE=4 SV=1 ; EVALUE=7e-41 ;
Q/S_length_ratio=0.887"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|E8R1I2|E8R1I2_ISOPI ;
ALN/Q_length_ratio=0.910 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Isosphaera pallida
(strain ATCC 43644 / DSM 9630 / IS1B) GN=Isop_1817 PE=4
SV=1 ; EVALUE=1e-38 ; Q/S_length_ratio=0.991"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|F0SQ88|F0SQ88_PLABD ;
ALN/Q_length_ratio=0.882 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Planctomyces
brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 /
NBRC 103401 / IFAM 1448) GN=Plabr_4696 PE=4 SV=1 ;
EVALUE=4e-37 ; Q/S_length_ratio=1.088"
/note="Pfam_scan:hit_1 (24..92);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:68; HMM_Length:71;
EVALUE:9.6e-16; BITSCORE: 57.1"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MTTESDRLLI NRVRKNDQTA WAELDKRYRG RLTAYVRRRL KDHASVEDVV QETFIGFSNS
61 LVNYDDKRDL QTWLFTIAAH KVTDQLRKMG RLRYQSGTDT EDEAMGQAPD DRQRGASTLA
121 RSAEQREREE DALGQALRDL VRDFQLKGEW AKVMALELLY VKGWGNAEVA ARLKRTEQDI
181 ANLKFQAKKR LHDHLVTAKL SPAVFPELQA E
//