LOCUS VTR90853.1 203 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana extracytoplasmic function alternative
sigma factor : RNA polymerase sigma factor, sigma-70 family
OS=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776
/ IFAM 1008 / 290) GN=Plim_0986 PE=4 SV=1: Sigma70_r2
protein.
ACCESSION LR593886-154
PROTEIN_ID VTR90853.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_68610"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|D5ST62|D5ST62_PLAL2 ;
ALN/Q_length_ratio=0.985 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Planctomyces limnophilus
(strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290)
GN=Plim_0986 PE=4 SV=1 ; EVALUE=9e-85 ;
Q/S_length_ratio=1.005"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|M5RQ59|M5RQ59_9PLAN ;
ALN/Q_length_ratio=0.980 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula
maiorica SM1 GN=RMSM_06978 PE=4 SV=1 ; EVALUE=8e-60 ;
Q/S_length_ratio=0.958"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DJB5|L0DJB5_SINAD ;
ALN/Q_length_ratio=0.961 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4755 PE=4 SV=1 ; EVALUE=5e-58 ;
Q/S_length_ratio=0.976"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|M5SZY3|M5SZY3_9PLAN ;
ALN/Q_length_ratio=0.990 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula sp.
SWK7 GN=RRSWK_04987 PE=4 SV=1 ; EVALUE=1e-55 ;
Q/S_length_ratio=0.990"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|M5UII0|M5UII0_9PLAN ;
ALN/Q_length_ratio=0.995 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula
sallentina SM41 GN=RSSM_00910 PE=4 SV=1 ; EVALUE=9e-55 ;
Q/S_length_ratio=0.990"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DF65|L0DF65_SINAD ;
ALN/Q_length_ratio=1.020 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3223 PE=4 SV=1 ; EVALUE=1e-52 ;
Q/S_length_ratio=0.953"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|A6C4A5|A6C4A5_9PLAN ;
ALN/Q_length_ratio=0.936 ; DESCRIPTION=Probable
extracytoplasmic function alternative sigma factor
OS=Planctomyces maris DSM 8797 GN=PM8797T_25111 PE=4 SV=1
; EVALUE=1e-41 ; Q/S_length_ratio=1.025"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|K5DPI1|K5DPI1_RHOBT ;
ALN/Q_length_ratio=0.951 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula
baltica SH28 GN=RBSH_00257 PE=4 SV=1 ; EVALUE=3e-40 ;
Q/S_length_ratio=1.010"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|M2B2Z3|M2B2Z3_9PLAN ;
ALN/Q_length_ratio=0.951 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula
europaea 6C GN=RE6C_02934 PE=4 SV=1 ; EVALUE=1e-39 ;
Q/S_length_ratio=1.010"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M5U7W8|M5U7W8_9PLAN ;
ALN/Q_length_ratio=0.951 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula
sallentina SM41 GN=RSSM_06514 PE=4 SV=1 ; EVALUE=2e-39 ;
Q/S_length_ratio=1.010"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|M5T6B2|M5T6B2_9PLAN ;
ALN/Q_length_ratio=0.975 ; DESCRIPTION=ECF sigma factor
OS=Rhodopirellula sp. SWK7 GN=RRSWK_02828 PE=4 SV=1 ;
EVALUE=2e-39 ; Q/S_length_ratio=0.962"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|M5S1W9|M5S1W9_9PLAN ;
ALN/Q_length_ratio=0.951 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula
europaea SH398 GN=RESH_03826 PE=4 SV=1 ; EVALUE=2e-39 ;
Q/S_length_ratio=1.010"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|Q7UEM7|Q7UEM7_RHOBA ;
ALN/Q_length_ratio=0.951 ; DESCRIPTION=Probable
extracytoplasmic function alternative sigma factor
OS=Rhodopirellula baltica (strain SH1) GN=sigE PE=4 SV=1 ;
EVALUE=3e-39 ; Q/S_length_ratio=1.010"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L7CA22|L7CA22_RHOBT ;
ALN/Q_length_ratio=0.951 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula
baltica SWK14 GN=RBSWK_05023 PE=4 SV=1 ; EVALUE=3e-39 ;
Q/S_length_ratio=1.010"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|K5CED8|K5CED8_RHOBT ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=ECF sigma factor
OS=Rhodopirellula baltica SH28 GN=RBSH_02471 PE=4 SV=1 ;
EVALUE=9e-39 ; Q/S_length_ratio=0.962"
/note="Pfam_scan:hit_1 (27..98);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:68; HMM_Length:71;
EVALUE:1.9e-13; BITSCORE: 49.8"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MAEPPLTRVT LLTRLRDGRD ADAWREFVQL YGPVVYRFAR NRGLQDADAA DLMQDVLRSV
61 ARNAHRMEYD PKRGTFRGWL YTVTRNKIYN FLSSQRNRPR GTGDADAQER LDATPAREEE
121 GPDADWEKEY QRRLSARAME LVRGEFQPNT WAAFWQTAVE GKSAAEVGTE LKMSPGAVYV
181 AKSRVLARLR DEVQKIMVEE DAA
//