LOCUS VTR90853.1 203 aa PRT BCT 03-FEB-2020 DEFINITION Gemmata massiliana extracytoplasmic function alternative sigma factor : RNA polymerase sigma factor, sigma-70 family OS=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=Plim_0986 PE=4 SV=1: Sigma70_r2 protein. ACCESSION LR593886-154 PROTEIN_ID VTR90853.1 SOURCE Gemmata massiliana ORGANISM Gemmata massiliana Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae; Gemmata. REFERENCE 1 AUTHORS CONSRTM Science for Life Laboratories JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution, Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden FEATURES Qualifiers source /organism="Gemmata massiliana" /chromosome="1" /isolate="Soil9" /mol_type="genomic DNA" /isolation_source="soil" /db_xref="taxon:1210884" protein /locus_tag="SOIL9_68610" /note="BLAST_uniprot:hit_1 ; ACCESSION=tr|D5ST62|D5ST62_PLAL2 ; ALN/Q_length_ratio=0.985 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=Plim_0986 PE=4 SV=1 ; EVALUE=9e-85 ; Q/S_length_ratio=1.005" /note="BLAST_uniprot:hit_2 ; ACCESSION=tr|M5RQ59|M5RQ59_9PLAN ; ALN/Q_length_ratio=0.980 ; DESCRIPTION=Extracytoplasmic function alternative sigma factor OS=Rhodopirellula maiorica SM1 GN=RMSM_06978 PE=4 SV=1 ; EVALUE=8e-60 ; Q/S_length_ratio=0.958" /note="BLAST_uniprot:hit_3 ; ACCESSION=tr|L0DJB5|L0DJB5_SINAD ; ALN/Q_length_ratio=0.961 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_4755 PE=4 SV=1 ; EVALUE=5e-58 ; Q/S_length_ratio=0.976" /note="BLAST_uniprot:hit_4 ; ACCESSION=tr|M5SZY3|M5SZY3_9PLAN ; ALN/Q_length_ratio=0.990 ; DESCRIPTION=Extracytoplasmic function alternative sigma factor OS=Rhodopirellula sp. SWK7 GN=RRSWK_04987 PE=4 SV=1 ; EVALUE=1e-55 ; Q/S_length_ratio=0.990" /note="BLAST_uniprot:hit_5 ; ACCESSION=tr|M5UII0|M5UII0_9PLAN ; ALN/Q_length_ratio=0.995 ; DESCRIPTION=Extracytoplasmic function alternative sigma factor OS=Rhodopirellula sallentina SM41 GN=RSSM_00910 PE=4 SV=1 ; EVALUE=9e-55 ; Q/S_length_ratio=0.990" /note="BLAST_uniprot:hit_6 ; ACCESSION=tr|L0DF65|L0DF65_SINAD ; ALN/Q_length_ratio=1.020 ; DESCRIPTION=RNA polymerase sigma factor, sigma-70 family OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_3223 PE=4 SV=1 ; EVALUE=1e-52 ; Q/S_length_ratio=0.953" /note="BLAST_uniprot:hit_7 ; ACCESSION=tr|A6C4A5|A6C4A5_9PLAN ; ALN/Q_length_ratio=0.936 ; DESCRIPTION=Probable extracytoplasmic function alternative sigma factor OS=Planctomyces maris DSM 8797 GN=PM8797T_25111 PE=4 SV=1 ; EVALUE=1e-41 ; Q/S_length_ratio=1.025" /note="BLAST_uniprot:hit_8 ; ACCESSION=tr|K5DPI1|K5DPI1_RHOBT ; ALN/Q_length_ratio=0.951 ; DESCRIPTION=Extracytoplasmic function alternative sigma factor OS=Rhodopirellula baltica SH28 GN=RBSH_00257 PE=4 SV=1 ; EVALUE=3e-40 ; Q/S_length_ratio=1.010" /note="BLAST_uniprot:hit_9 ; ACCESSION=tr|M2B2Z3|M2B2Z3_9PLAN ; ALN/Q_length_ratio=0.951 ; DESCRIPTION=Extracytoplasmic function alternative sigma factor OS=Rhodopirellula europaea 6C GN=RE6C_02934 PE=4 SV=1 ; EVALUE=1e-39 ; Q/S_length_ratio=1.010" /note="BLAST_uniprot:hit_12 ; ACCESSION=tr|M5U7W8|M5U7W8_9PLAN ; ALN/Q_length_ratio=0.951 ; DESCRIPTION=Extracytoplasmic function alternative sigma factor OS=Rhodopirellula sallentina SM41 GN=RSSM_06514 PE=4 SV=1 ; EVALUE=2e-39 ; Q/S_length_ratio=1.010" /note="BLAST_uniprot:hit_10 ; ACCESSION=tr|M5T6B2|M5T6B2_9PLAN ; ALN/Q_length_ratio=0.975 ; DESCRIPTION=ECF sigma factor OS=Rhodopirellula sp. SWK7 GN=RRSWK_02828 PE=4 SV=1 ; EVALUE=2e-39 ; Q/S_length_ratio=0.962" /note="BLAST_uniprot:hit_11 ; ACCESSION=tr|M5S1W9|M5S1W9_9PLAN ; ALN/Q_length_ratio=0.951 ; DESCRIPTION=Extracytoplasmic function alternative sigma factor OS=Rhodopirellula europaea SH398 GN=RESH_03826 PE=4 SV=1 ; EVALUE=2e-39 ; Q/S_length_ratio=1.010" /note="BLAST_uniprot:hit_14 ; ACCESSION=tr|Q7UEM7|Q7UEM7_RHOBA ; ALN/Q_length_ratio=0.951 ; DESCRIPTION=Probable extracytoplasmic function alternative sigma factor OS=Rhodopirellula baltica (strain SH1) GN=sigE PE=4 SV=1 ; EVALUE=3e-39 ; Q/S_length_ratio=1.010" /note="BLAST_uniprot:hit_13 ; ACCESSION=tr|L7CA22|L7CA22_RHOBT ; ALN/Q_length_ratio=0.951 ; DESCRIPTION=Extracytoplasmic function alternative sigma factor OS=Rhodopirellula baltica SWK14 GN=RBSWK_05023 PE=4 SV=1 ; EVALUE=3e-39 ; Q/S_length_ratio=1.010" /note="BLAST_uniprot:hit_15 ; ACCESSION=tr|K5CED8|K5CED8_RHOBT ; ALN/Q_length_ratio=1.000 ; DESCRIPTION=ECF sigma factor OS=Rhodopirellula baltica SH28 GN=RBSH_02471 PE=4 SV=1 ; EVALUE=9e-39 ; Q/S_length_ratio=0.962" /note="Pfam_scan:hit_1 (27..98); Pfam:PF04542.9:Sigma70_r2; Pfam_type:Domain;HMM_aln_Length:68; HMM_Length:71; EVALUE:1.9e-13; BITSCORE: 49.8" /note="GO_domain:GO:0003677" /note="GO_domain:GO:0001071" /note="GO_domain:GO:0000988" /note="GO_domain:GO:0034641" /note="GO_domain:GO:0009058" /note="GO_domain:GO:0043234" /note="GO_domain:GO:0005622" BEGIN 1 MAEPPLTRVT LLTRLRDGRD ADAWREFVQL YGPVVYRFAR NRGLQDADAA DLMQDVLRSV 61 ARNAHRMEYD PKRGTFRGWL YTVTRNKIYN FLSSQRNRPR GTGDADAQER LDATPAREEE 121 GPDADWEKEY QRRLSARAME LVRGEFQPNT WAAFWQTAVE GKSAAEVGTE LKMSPGAVYV 181 AKSRVLARLR DEVQKIMVEE DAA //