LOCUS RID72769.1 1007 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-4975
PROTEIN_ID RID72769.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C04647"
/db_xref="Phytozome:Brara.C04647"
intron_pos 100:2 (1/14)
intron_pos 176:0 (2/14)
intron_pos 249:0 (3/14)
intron_pos 287:2 (4/14)
intron_pos 320:2 (5/14)
intron_pos 350:0 (6/14)
intron_pos 426:2 (7/14)
intron_pos 488:1 (8/14)
intron_pos 555:0 (9/14)
intron_pos 668:0 (10/14)
intron_pos 702:0 (11/14)
intron_pos 801:1 (12/14)
intron_pos 851:0 (13/14)
intron_pos 946:0 (14/14)
BEGIN
1 MSSDKHSARF LNKLKMERVR TMLTHTYPYP HEHSRHAMIA VIMGCLFFIS SDNMHTLVEK
61 LDNNFKWWSM YACLLGFFYF FSSPFLGKTI QPSYSTFSRW HVAWILVAAL YHLPSFQSMG
121 LDLRMNLSLF LTIYTSSVVF LFVFHIVFIG FWHLGLVSRV ARRRPAILTI LQNCAVLSIA
181 CCIFYSHCGN RAILRQTPLE RRRSSNSTWL TKLVQIDELK DQVCSSWFAP VGSASDYPLL
241 SKWVIYGELA CNGSCPVTSD EISPIYSLWA TFIGLYIANY VVERSTGWAL AHPVSVNNYE
301 KLKKQQMKPN FLDMVPWYSG TSADLFKTVF DLLVSVTVFL GRFDMRMMQA AMTKTCDGDE
361 RKELLYDHFT DMDDFWFDFM ADTGDGGNSS YSVAKLLAQP FINVPLDDDL VSLQRGNVLL
421 IGGDLAYPNP SAFTYEKRLF CPFEYALQPP HWYKNDSISV EKPELPEGVS DLKHYDGPQC
481 FLIPGNHDWF DGLNTFMRYI CHKSWLGGWL MPQKKSYFAL QLPKGWWVFG LDLALHGDID
541 VYQFNFFSEL VKEKVGKDDG VIIITHEPNW LLDWYWKDDT GKNMRHLICA FLKGRCKLRM
601 AGDLHHYMRH SCTHQSDGPA AHVEHLLVNG CGGAFLHPTH VFSDFSKFYG ASYDSKYAYP
661 SFKDSSRIAL GNILKFRKKN WQFDFIGGII YFVLVFSLFP QCKLGHILRD DSFSGHLGSF
721 LGTVWSAFVY ITEQSYVSFT GVVMLLVAAI MFVPSKISRK RRMLIGVLHV AAHLTAALIL
781 MLLLELGIET CIQHKLLATS GYHTLYQWYK SVENEHFPDP TGLRVRIEQW TFGFYPACIK
841 YLMSAFDIPE VMAVTRTNIC REGMESLSRS GAAIYYASVF LYFWVFSTPV VSLVFGSYLY
901 ICINWLHIHF DEAFSSLRIA NYKSFTRFHI KSDGDLEVFT LGVDKVPKEW KLDKDWDSEP
961 RSTVKMSHLR RFPSKWCATT SQQDPINTVK IVDHFVISRS DKEVGGS
//