LOCUS RID72071.1 1861 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-4277
PROTEIN_ID RID72071.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C03977"
/db_xref="Phytozome:Brara.C03977"
intron_pos 49:2 (1/20)
intron_pos 68:0 (2/20)
intron_pos 100:2 (3/20)
intron_pos 537:0 (4/20)
intron_pos 577:0 (5/20)
intron_pos 643:0 (6/20)
intron_pos 706:0 (7/20)
intron_pos 733:0 (8/20)
intron_pos 752:1 (9/20)
intron_pos 922:0 (10/20)
intron_pos 940:0 (11/20)
intron_pos 955:1 (12/20)
intron_pos 1020:0 (13/20)
intron_pos 1038:0 (14/20)
intron_pos 1065:0 (15/20)
intron_pos 1111:0 (16/20)
intron_pos 1150:0 (17/20)
intron_pos 1183:2 (18/20)
intron_pos 1252:2 (19/20)
intron_pos 1377:0 (20/20)
BEGIN
1 MHGSVSGYVL VNAEVDSMGG VIDSGGGGGG GIGLKTSPTA IEKAQAELRQ EYDVREERRR
61 ELEFLEKGGN PLDFKFGVAT SLSFQSTSLT DQQAEHFLNS EVKDSFAMTA SPHGDSAESS
121 GRPAVPTVSE PNTADNLLLF DSGNKSVEGE NNSKYPNRQN RTSESERSSK ANTNQNTKET
181 EDSAIFRPYA RRNRTKINRD PARSSSVDLI QNRGGLATSL SARRGSVDGK GFIPDAANQK
241 DKQTTSVSCP VFGNSNGTIV PTNVAPSNLL NTKVDGEPIV RESAAGSRTS LMKDGADITC
301 RKSSADLPFE EAEKKADLVL NSTEIGSPKA AAIAGQKNNY TQGDSTGEKE SLTDRGAAGT
361 KGLESSHANN LEVDVDTERD IYRVDKLDSD ESSVQKASRV EGLLNHTVGE LMIEDETGRS
421 TTITGECSPT REMDMNSVKI ENENYRSTPE LQNEEKYSDT ENDKKGGSVL ANNPSSSLHP
481 AIPQASVDAN SSVVGNNVLS GTDVEALKHQ PSSDEGSKVL DKVKEDSILE EARIIQLKRR
541 RIAELSCGTV PLEVREKCQW DFVLEEMAWL ANDFAQERLW KMTAAAQICH RVALTSQLRL
601 EKQIQYRKLK NIASILSNAV LEFWSSVEVP RELEETNLGN DKETCQESNC DTGRKSFAPG
661 VREYACRFLK YNNSSVPYHS AASSTPDYMC DSELLDVSLV DQLTEESLFY SVPSGAMKVY
721 QISIETHLAR CEKYGNSMKE EVDTSGYDAA GDIEYDVTAF DEDEGETSAY YLPRAFECSK
781 SFNLSHKKRK NLMKSHSARS YDLGADYVNY TGGSNSSNLM AKRPGSNINA GSVPTRVRTA
841 SRPRIVGSFG YATAGSLPVP SKTDASSGDT SSFQDEQSSL PGGSAFQKGT EVESSGTFEK
901 QLPYDMAETS GKPKKKKKIH LGSAYDQTWH LDSSVHAEQK DHWKKRPENH FDTNGLYGHH
961 AKKQKTTKQL VENNFDGAMG LTGSIPSPAA SQMSNMSNSN KSIKFIGSRD RARKIKGLKI
1021 SSSQHGSGTT WSLFEDQALV VLVHDMGPNW ELISDAMNST LKIKCIYRNP IECKERHKIL
1081 MDKTASDGAD SAEDSGTSQS YPSTLPGIPK GSARQLFQRL QGPMEEDTLK SHFEKICLIG
1141 KKLHCRKTQN DGRDSKQIVP VHNSQVMALS QVFPNNLNGG VLTPLDLCDA STSGQDLFSL
1201 ESPGSHLGLP MLNQGTPVLP TSGATPSTSG SSGVVPGNNL PTTPGLHSAT PRDGRFNVPR
1261 GSLPLDEQHR LQRHNQISGN NLQQNSLSTH GAVSGLGHRV VPGVNTVGVS GTNRGTPMSR
1321 SGFQGIGSPA VPNNVSMLSS GMVGIPNTGN INSGRGASPR NSMVRPPREA VQHMMRAAQG
1381 NSQGIPAFGS LSSGFTNNQT TSVQSYPGHV SQQHQMPQQS HVLGNSHNPP LQSPGLSHAT
1441 GAQQDGFALR QRQMHQRYMQ QQQVAASNTT VPHGQQQSQG TSVSPPQQCP QTQPPVSPQP
1501 LPIPPVSTSP NSAMAQQNPQ KSQLPLHGLG RNPQSGAPGI NNQSGKQRQR QHQQQSGRQH
1561 PHQRQPTQGQ QPSKQSKGMG RGNMIHQNIT VDQSHLNGFT MPPSSQGTEK GEAVVPVRSD
1621 QRLPKTFPGA TSPSQQQQVQ LPSDDCIQGQ SSPAVSSPSI SPAVAPSNHQ HLLLHQKQRQ
1681 VQPTAQRIVH QNHLGNSDSS RKSQADFVPR VPQSVTNTTS SMSTSKGMPQ VSDDSKKVKA
1741 VGSTAVPSPN ALEPPTNAAS VQSAAPKVVN SSNTDSACSN PVTSPNQGLA QKHLPAGVPC
1801 QELKGVIQRQ PSLPSVEQRR PKLPEQLTVQ NQKHLASDDQ PPQLEEAQKL PSPKPPETKV
1861 E
//