LOCUS RID71527.1 1812 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-3734
PROTEIN_ID RID71527.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C03461"
/db_xref="Phytozome:Brara.C03461"
intron_pos 54:2 (1/34)
intron_pos 89:0 (2/34)
intron_pos 126:2 (3/34)
intron_pos 167:2 (4/34)
intron_pos 201:2 (5/34)
intron_pos 257:0 (6/34)
intron_pos 296:0 (7/34)
intron_pos 322:2 (8/34)
intron_pos 356:2 (9/34)
intron_pos 427:0 (10/34)
intron_pos 505:0 (11/34)
intron_pos 547:2 (12/34)
intron_pos 587:0 (13/34)
intron_pos 660:0 (14/34)
intron_pos 713:0 (15/34)
intron_pos 738:2 (16/34)
intron_pos 808:1 (17/34)
intron_pos 877:2 (18/34)
intron_pos 904:1 (19/34)
intron_pos 943:2 (20/34)
intron_pos 1000:2 (21/34)
intron_pos 1057:0 (22/34)
intron_pos 1071:2 (23/34)
intron_pos 1086:0 (24/34)
intron_pos 1134:2 (25/34)
intron_pos 1166:1 (26/34)
intron_pos 1463:0 (27/34)
intron_pos 1557:0 (28/34)
intron_pos 1589:0 (29/34)
intron_pos 1648:2 (30/34)
intron_pos 1676:0 (31/34)
intron_pos 1717:2 (32/34)
intron_pos 1748:2 (33/34)
intron_pos 1800:0 (34/34)
BEGIN
1 MHLFNGWLPP PVAEETKKEK ESFARVVRCV KELHRPDDPE SVYATLKWIS VIELYVRAKS
61 DLAVEDVTEL VEIGLQIFHS SQDKLYAQVR WGNVLVRLMN KYRKKLSLKV EWRPLYDTLI
121 HAHFSRSPGP EGWRLRQRHF EAVTSLTRSC RRFFPQGAAA DIWSEFMSLL ENPWHNSSFE
181 GSGFVRLFLP TNPENQDFFS EKWINNCLEL WDSIPNCQFW NSQWAAVLAR VIKNCSSIDW
241 ESYLPMLFSR FLNMFEVPVA NGSGSYPFSV DVPRNTRFLF PNRTMTPSKS IAQSIILFQV
301 YFLKPGSTAH EQFKKLVNLL EQYYHPSNGG RWTYSLERFL LHLVVAFQKR LQREQQNPDS
361 LSKVCLGKPE RIAFVEVVLK LIDRGQYSKN EHLSETVAAA TSILSYVEPS LVLPFVASRF
421 HLALETTTAT HQLKTAMMSV AFAGRSILQS SMSTAKQELG GDMDDSVFLD LIGISLSNAL
481 LGMDANDPPK TLATMQLIGS IFSNMAVLDD SSDDISIMTM ASFSEWLDEF LCRLIALLQH
541 LEPNSVINEG LSSSATSGTF LVEDGPYYYC MLEILLGRLS GSLYSQALKK ISKFVRTNIL
601 PGAIAEVGLL CCACVHSNPE EAVVQIVEPM ILAVISSLKD TPVTGFGGKG SADTLGSNKK
661 DKQTLSPALE AAIDYQLKVL SVTITYAGSS LLRYKDHFIE AISSAFNSSS WKVNGAGDHL
721 LRSLLGSLIL YYPMDQYKCL SRHPAAPALE EWISTKASSK DEQVAHSRWH VPTKEEIQFA
781 NELLDLHLQS ALDDLLRICQ SNIHSDAGDE KTHLKVTLLR IDSTLQGVLS CLPDFRPSPK
841 HDMFEELPFF IAGASGSSVG SAEIRERTAE TIHAACKYLL EKKSDDSILL VLIIRIMDAL
901 GNYGSLEYDE WYNHRQAWKL ESAAIVEPPA NFITEFHSKG KRRPRWALID KAYMHNTWRS
961 SQSSYHLFRT DGNFSPPASL TLLVDDLLTL CLHNYETVRV IAGKSLLKLL KRWPPLLSKC
1021 VRSLSENLRN PDAPENVVLG SCGILSSQSV LKHLTTDPKS FSSFLLGILS SSHHESMKSQ
1081 KAIIELFVKY NIHFAGLSRN ILRSLDSHVE GSTSGDLVSQ ISSMSFDSSS LHWRYNLMAN
1141 RVLLLLAMSC RMDPAFSFKI LNETAGHFLK NLKSQLPQTR ILAISALNTL LKESPHKMQG
1201 KDQPPVSSQE NANSSLDLAL SQIFQEEGFF KETFESLSHI HITDTDSSSR GNHGSSSFQS
1261 MADKSITRFY FEFSASWPRT PSWISLLGSD IFYPSFARIF KRLAQECGVP VLLALKSPLE
1321 EFCNAKERPK QCVAAETLAG LLHSDVNGLQ SEWDSWIMVQ LQNVILGQSV ESIPEWATCI
1381 RYAVTGKGKQ GTKIPMMRQQ ILDCIVAPLP PTATTTVVSK RYAFLSAALI ELSPPKMPVS
1441 EVKLHIALLD ELIRNMSHSS AQIREAIGVI LSVLCSNIRL RMSYQQKHPS EEGRTDVDSQ
1501 LKEENWFKLI SARASEAVTN IQQASISDSM DTSADVDMEN AQSNGDSLDD VKWMETLFHF
1561 IISSFKSGRS SFLGDVIAGF LYPVISLQET SHKDLSTLAK AAFELLKWRV FPGSHLQKVI
1621 EVILSSADDS NWRIRSSTLT YLRTFMYRHT FILAHEEKQK IWKTVEKLLV DSQVEVREHA
1681 AAVLAGLMKG GDEDFAADFR DRSYAEANSI QRKRNRRKSS STQSIAAVHG AVLGLVASVL
1741 SVPYDMPSWL PDHVTLLARF AGEPTPVKST VTKAVAEFRR THADTWNIQK DSFTEEQLEV
1801 LADTSSSSSY FA
//