LOCUS BAD37630.1 372 aa PRT PLN 16-FEB-2008
DEFINITION Oryza sativa Japonica Group translocation protein-related-
like protein.
ACCESSION AP004180-3
PROTEIN_ID BAD37630.1
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 117057)
AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K.
TITLE Direct Submission
JOURNAL Submitted (20-SEP-2001)
Contact:Takuji Sasaki
National Institute of Agrobiological Sciences, Rice Genome
Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
URL :http://rgp.dna.affrc.go.jp/
REFERENCE 2
AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K.
TITLE Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2, BAC
clone:OJ1126_B05
JOURNAL Published Only in Database(2001)
COMMENT Genes were predicted from the integrated results of the following:
GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH
(http://www.softberry.com/), GeneMark.hmm
(http://opal.biology.gatech.edu/GeneMark/), GlimmerM
(http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM
(http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor
(http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4
(http://globin.cse.psu.edu/html/docs/sim4.html), gap2
(http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The
genomic sequence was searched against NCBI NonRedundant Protein
database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA
sequence database at RGP or DDBJ. Protein homologies of the coding
regions were searched against NCBI NonRedundant Protein database
with BLASTP. ESTs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no. and RGP clone ID.
Full-length cDNAs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no.
A gene with identity or significant homology to a protein is
classified based on the protein name to indicate the homology
level such as same name, 'putative-' and '-like protein'. A gene
without significant homology to any protein but with full-length
cDNA or EST homology (covering almost the entire length of partial
sequence) is classified as an 'unknown' protein. A gene predicted
by two or more gene prediction programs is classified as a
'hypothetical' protein according to IRGSP standard. A gene
predicted by a single gene prediction program is also classified
as a probable 'hypothetical' protein and is included as a
miscellaneous feature of the sequence.
The orientation of the sequence is from M13rev to -21M13 of the
BAC clone. This sequence of OJ1126_B05 clone has an overlap with
OSJNBa0065F08 clone (DDBJ: AP005770) at 5' end and an overlap with
OJ1287_H05 (DDBJ: AP004136) at 3' end. The sequence was generated
by combining Monsanto and RGP-Japan sequencing data. Detailed
information on overlap and assembly quality together with
annotation of this entry is available at
http://rgp.dna.affrc.go.jp/GenomeSeq.html
FEATURES Qualifiers
source /chromosome="2"
/clone="OJ1126_B05"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="genomic DNA"
/organism="Oryza sativa Japonica Group"
protein /gene="OJ1126_B05.6"
/note="contains full-length cDNA(s): AK102414,AK060832"
intron_pos 34:0 (1/4)
intron_pos 140:0 (2/4)
intron_pos 207:1 (3/4)
intron_pos 283:2 (4/4)
BEGIN
1 MAGKGAKATA AKSAEKEKGK KAPVSRSSRA GSQEKPAPNK DVYQLFAEKV RDNKQLESRW
61 AIMQETRVEY FRGKDFTTFM RNHPEVREIL GPDKDLEVED IVNTLLSKNL VIRCDRVWKT
121 VRPGKKKLSS WPAHLEIHRE QVFTENDGFF AWMFLKRRTL WQTILSFVWP LFALAVCLFP
181 VYPYQCKIVV LYSCAGALLF IVSILLLRAA IFGILWVLLG KRVWFFPNIN AEETTFRELV
241 RFWPEKDEGE RPKWTSRLFY ATVAVLVILL LRHHAPDEAA RARYQKKVSN IIDDVLEWSP
301 KLALSGMMEK HTGTNASETS NHTSGTGSSP VPPTNEGNTA KADPDMDRQT NSDKVQDGDE
361 YGDDMRTRFS EV
//