LOCUS BAD37630.1 372 aa PRT PLN 16-FEB-2008 DEFINITION Oryza sativa Japonica Group translocation protein-related- like protein. ACCESSION AP004180-3 PROTEIN_ID BAD37630.1 SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 117057) AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K. TITLE Direct Submission JOURNAL Submitted (20-SEP-2001) Contact:Takuji Sasaki National Institute of Agrobiological Sciences, Rice Genome Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan URL :http://rgp.dna.affrc.go.jp/ REFERENCE 2 AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K. TITLE Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2, BAC clone:OJ1126_B05 JOURNAL Published Only in Database(2001) COMMENT Genes were predicted from the integrated results of the following: GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH (http://www.softberry.com/), GeneMark.hmm (http://opal.biology.gatech.edu/GeneMark/), GlimmerM (http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM (http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor (http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4 (http://globin.cse.psu.edu/html/docs/sim4.html), gap2 (http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The genomic sequence was searched against NCBI NonRedundant Protein database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA sequence database at RGP or DDBJ. Protein homologies of the coding regions were searched against NCBI NonRedundant Protein database with BLASTP. ESTs represent the identified cDNA sequences using BLASTN with the corresponding DDBJ accession no. and RGP clone ID. Full-length cDNAs represent the identified cDNA sequences using BLASTN with the corresponding DDBJ accession no. A gene with identity or significant homology to a protein is classified based on the protein name to indicate the homology level such as same name, 'putative-' and '-like protein'. A gene without significant homology to any protein but with full-length cDNA or EST homology (covering almost the entire length of partial sequence) is classified as an 'unknown' protein. A gene predicted by two or more gene prediction programs is classified as a 'hypothetical' protein according to IRGSP standard. A gene predicted by a single gene prediction program is also classified as a probable 'hypothetical' protein and is included as a miscellaneous feature of the sequence. The orientation of the sequence is from M13rev to -21M13 of the BAC clone. This sequence of OJ1126_B05 clone has an overlap with OSJNBa0065F08 clone (DDBJ: AP005770) at 5' end and an overlap with OJ1287_H05 (DDBJ: AP004136) at 3' end. The sequence was generated by combining Monsanto and RGP-Japan sequencing data. Detailed information on overlap and assembly quality together with annotation of this entry is available at http://rgp.dna.affrc.go.jp/GenomeSeq.html FEATURES Qualifiers source /chromosome="2" /clone="OJ1126_B05" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="genomic DNA" /organism="Oryza sativa Japonica Group" protein /gene="OJ1126_B05.6" /note="contains full-length cDNA(s): AK102414,AK060832" intron_pos 34:0 (1/4) intron_pos 140:0 (2/4) intron_pos 207:1 (3/4) intron_pos 283:2 (4/4) BEGIN 1 MAGKGAKATA AKSAEKEKGK KAPVSRSSRA GSQEKPAPNK DVYQLFAEKV RDNKQLESRW 61 AIMQETRVEY FRGKDFTTFM RNHPEVREIL GPDKDLEVED IVNTLLSKNL VIRCDRVWKT 121 VRPGKKKLSS WPAHLEIHRE QVFTENDGFF AWMFLKRRTL WQTILSFVWP LFALAVCLFP 181 VYPYQCKIVV LYSCAGALLF IVSILLLRAA IFGILWVLLG KRVWFFPNIN AEETTFRELV 241 RFWPEKDEGE RPKWTSRLFY ATVAVLVILL LRHHAPDEAA RARYQKKVSN IIDDVLEWSP 301 KLALSGMMEK HTGTNASETS NHTSGTGSSP VPPTNEGNTA KADPDMDRQT NSDKVQDGDE 361 YGDDMRTRFS EV //