LOCUS       BAD25407.1               810 aa    PRT              PLN 16-FEB-2008
DEFINITION  Oryza sativa Japonica Group putative DNA repair protein
            rad8 protein.
ACCESSION   AP004777-7
PROTEIN_ID  BAD25407.1
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 144917)
  AUTHORS   Sasaki,T., Matsumoto,T. and Yamamoto,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2002)
            Contact:Takuji Sasaki
            National Institute of Agrobiological Sciences, Rice Genome
            Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
            URL    :http://rgp.dna.affrc.go.jp/
REFERENCE   2
  AUTHORS   Sasaki,T., Matsumoto,T. and Yamamoto,K.
  TITLE     Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2, PAC
            clone:P0458B05
  JOURNAL   Published Only in Database(2002)
COMMENT     Genes were predicted from the integrated results of the following:
            GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH
            (http://www.softberry.com/), GeneMark.hmm
            (http://opal.biology.gatech.edu/GeneMark/), GlimmerM
            (http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM
            (http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor
            (http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4
            (http://globin.cse.psu.edu/html/docs/sim4.html), gap2
            (http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The
            genomic sequence was searched against NCBI NonRedundant Protein
            database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA
            sequence database at RGP or DDBJ. Protein homologies of the coding
            regions were searched against NCBI NonRedundant Protein database
            with BLASTP. ESTs represent the identified cDNA sequences using
            BLASTN with the corresponding DDBJ accession no. and RGP clone ID.
            Full-length cDNAs represent the identified cDNA sequences using
            BLASTN with the corresponding DDBJ accession no.
            
            A gene with identity or significant homology to a protein is
            classified based on the protein name to indicate the homology
            level such as same name, 'putative-' and '-like protein'.  A gene
            without significant homology to any protein but with full-length
            cDNA or EST homology (covering almost the entire length of partial
            sequence) is classified as an 'unknown' protein. A gene predicted
            by two or more gene prediction programs is classified as a
            'hypothetical' protein according to IRGSP standard. A gene
            predicted by a single gene prediction program is also classified
            as a probable 'hypothetical' protein and is included as a
            miscellaneous feature of the sequence.
            
            The orientation of the sequence is from T7 to SP6 of the PAC
            clone. This sequence of P0458B05 clone has an overlap with
            P0415B12 clone (DDBJ: AP004772) at 5' end and an overlap with
            P0475F05 (DDBJ: AP004879) at 3' end.  Detailed information on
            overlap and assembly quality together with annotation of this
            entry is available at http://rgp.dna.affrc.go.jp/GenomeSeq.html
FEATURES             Qualifiers
     source          /chromosome="2"
                     /clone="P0458B05"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="genomic DNA"
                     /organism="Oryza sativa Japonica Group"
     protein         /gene="P0458B05.20"
                     /note="contains full-length cDNA(s): AK063375"
     intron_pos      9:2 (1/18)
     intron_pos      55:0 (2/18)
     intron_pos      73:0 (3/18)
     intron_pos      120:0 (4/18)
     intron_pos      170:2 (5/18)
     intron_pos      199:0 (6/18)
     intron_pos      289:0 (7/18)
     intron_pos      338:0 (8/18)
     intron_pos      390:0 (9/18)
     intron_pos      412:2 (10/18)
     intron_pos      453:2 (11/18)
     intron_pos      487:0 (12/18)
     intron_pos      524:2 (13/18)
     intron_pos      615:2 (14/18)
     intron_pos      682:2 (15/18)
     intron_pos      714:0 (16/18)
     intron_pos      738:0 (17/18)
     intron_pos      771:0 (18/18)
BEGIN
        1 MDTVLLSVSV YINSSMFHGQ KQSTPKAARA ATEDSTFHPL PALFKLTGLS PFKKAAFTPE
       61 DLYSRKRPLE TKSSAPATKL TTEKLRLSSD GNEDDHAERI VSDSELDDII GISDSSALEE
      121 RDPPDALQCD LRPYQKQAFY WMMQLEKGSS SQDAATTLHP CWEAYKLEDK RELVLYLNVF
      181 SGDATTEFPS TLQLARGGIL ADAMGLGKTI MTIALLLADS SKGCITTQHS THICEEASGL
      241 GELPVQPHDD VKKLAIPFSF SKLRKPKTPL IAGGNLIVCP MTLLGQWKAE IEAHATPGSV
      301 SIYVHYGQNR PKEANLIGQS DIVLTTYGVL SSEFSNENST ESGGLYSIHW FRVVLDEAHM
      361 IKSPKSLISL AAAALTADRR WCLTGTPIQN NLEDIYSLFR FLRVEPWRNW SLWHKLVQKP
      421 YEEGDERGLK LVQSILKPIM LRRNKNSTDK EGRPILILPP ANIEVKYCDL SETEKDFYDA
      481 LFRRSKVKFD QFVEQGRVLH NYASILELLL RLRQCCDHPF LVLSRGDTQE FADLNKLAKR
      541 FLHGGNGAVN GDSSLPSRAY IEEVVQELQK GEGECPICLE AFEDAVLTPC AHRLCRECLL
      601 SSWRSASAGL CPVCRKSMSK QDLITAPTDN RFQIDVEKNW VESSKISFLL QELEVLRTSG
      661 AKSIIFSQWT AFLDLLQIPL SRHNFSFARL DGTLNLQQRE KVIKEFSEDK SILVLLMSLK
      721 AGGVGINLTA ASNAFVMDPW WNPAVEEQAI MRIHRIGQTK SVSIKRFIVK GTVEERMEAV
      781 QARKQRMISG ALTDQEVRSA RIEELKMLFS
//