LOCUS BAD25407.1 810 aa PRT PLN 16-FEB-2008 DEFINITION Oryza sativa Japonica Group putative DNA repair protein rad8 protein. ACCESSION AP004777-7 PROTEIN_ID BAD25407.1 SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 144917) AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K. TITLE Direct Submission JOURNAL Submitted (20-FEB-2002) Contact:Takuji Sasaki National Institute of Agrobiological Sciences, Rice Genome Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan URL :http://rgp.dna.affrc.go.jp/ REFERENCE 2 AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K. TITLE Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2, PAC clone:P0458B05 JOURNAL Published Only in Database(2002) COMMENT Genes were predicted from the integrated results of the following: GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH (http://www.softberry.com/), GeneMark.hmm (http://opal.biology.gatech.edu/GeneMark/), GlimmerM (http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM (http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor (http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4 (http://globin.cse.psu.edu/html/docs/sim4.html), gap2 (http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The genomic sequence was searched against NCBI NonRedundant Protein database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA sequence database at RGP or DDBJ. Protein homologies of the coding regions were searched against NCBI NonRedundant Protein database with BLASTP. ESTs represent the identified cDNA sequences using BLASTN with the corresponding DDBJ accession no. and RGP clone ID. Full-length cDNAs represent the identified cDNA sequences using BLASTN with the corresponding DDBJ accession no. A gene with identity or significant homology to a protein is classified based on the protein name to indicate the homology level such as same name, 'putative-' and '-like protein'. A gene without significant homology to any protein but with full-length cDNA or EST homology (covering almost the entire length of partial sequence) is classified as an 'unknown' protein. A gene predicted by two or more gene prediction programs is classified as a 'hypothetical' protein according to IRGSP standard. A gene predicted by a single gene prediction program is also classified as a probable 'hypothetical' protein and is included as a miscellaneous feature of the sequence. The orientation of the sequence is from T7 to SP6 of the PAC clone. This sequence of P0458B05 clone has an overlap with P0415B12 clone (DDBJ: AP004772) at 5' end and an overlap with P0475F05 (DDBJ: AP004879) at 3' end. Detailed information on overlap and assembly quality together with annotation of this entry is available at http://rgp.dna.affrc.go.jp/GenomeSeq.html FEATURES Qualifiers source /chromosome="2" /clone="P0458B05" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="genomic DNA" /organism="Oryza sativa Japonica Group" protein /gene="P0458B05.20" /note="contains full-length cDNA(s): AK063375" intron_pos 9:2 (1/18) intron_pos 55:0 (2/18) intron_pos 73:0 (3/18) intron_pos 120:0 (4/18) intron_pos 170:2 (5/18) intron_pos 199:0 (6/18) intron_pos 289:0 (7/18) intron_pos 338:0 (8/18) intron_pos 390:0 (9/18) intron_pos 412:2 (10/18) intron_pos 453:2 (11/18) intron_pos 487:0 (12/18) intron_pos 524:2 (13/18) intron_pos 615:2 (14/18) intron_pos 682:2 (15/18) intron_pos 714:0 (16/18) intron_pos 738:0 (17/18) intron_pos 771:0 (18/18) BEGIN 1 MDTVLLSVSV YINSSMFHGQ KQSTPKAARA ATEDSTFHPL PALFKLTGLS PFKKAAFTPE 61 DLYSRKRPLE TKSSAPATKL TTEKLRLSSD GNEDDHAERI VSDSELDDII GISDSSALEE 121 RDPPDALQCD LRPYQKQAFY WMMQLEKGSS SQDAATTLHP CWEAYKLEDK RELVLYLNVF 181 SGDATTEFPS TLQLARGGIL ADAMGLGKTI MTIALLLADS SKGCITTQHS THICEEASGL 241 GELPVQPHDD VKKLAIPFSF SKLRKPKTPL IAGGNLIVCP MTLLGQWKAE IEAHATPGSV 301 SIYVHYGQNR PKEANLIGQS DIVLTTYGVL SSEFSNENST ESGGLYSIHW FRVVLDEAHM 361 IKSPKSLISL AAAALTADRR WCLTGTPIQN NLEDIYSLFR FLRVEPWRNW SLWHKLVQKP 421 YEEGDERGLK LVQSILKPIM LRRNKNSTDK EGRPILILPP ANIEVKYCDL SETEKDFYDA 481 LFRRSKVKFD QFVEQGRVLH NYASILELLL RLRQCCDHPF LVLSRGDTQE FADLNKLAKR 541 FLHGGNGAVN GDSSLPSRAY IEEVVQELQK GEGECPICLE AFEDAVLTPC AHRLCRECLL 601 SSWRSASAGL CPVCRKSMSK QDLITAPTDN RFQIDVEKNW VESSKISFLL QELEVLRTSG 661 AKSIIFSQWT AFLDLLQIPL SRHNFSFARL DGTLNLQQRE KVIKEFSEDK SILVLLMSLK 721 AGGVGINLTA ASNAFVMDPW WNPAVEEQAI MRIHRIGQTK SVSIKRFIVK GTVEERMEAV 781 QARKQRMISG ALTDQEVRSA RIEELKMLFS //