LOCUS       AMU96404.1               533 aa    PRT              BCT 21-JUN-2016
DEFINITION  Sphingopyxis terrae subsp. terrae NBRC 15098 lysine--tRNA
            ligase protein.
ACCESSION   CP013342-3439
PROTEIN_ID  AMU96404.1
SOURCE      Sphingopyxis terrae subsp. terrae NBRC 15098
  ORGANISM  Sphingopyxis terrae subsp. terrae NBRC 15098
            Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingopyxis.
REFERENCE   1  (bases 1 to 3979087)
  AUTHORS   Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
            Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
  TITLE     Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
            111660), a Polyethylene Glycol Degrader
  JOURNAL   Genome Announc 4 (3) (2016)
   PUBMED   27284143
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3979087)
  AUTHORS   Yoshiyuki,O.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
            University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Annotation was conducted using PGAP and MiGAP, and PGAP annotation
            was curated by referencing to the MiGAP annotation with the aid of
            annotation support tool of GenomeMatcher software.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: newbler v. 2.8
            Genome Coverage       :: 110x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI
            Annotation Date              :: 11/30/2015 14:33:14
            Annotation Pipeline          :: NCBI Prokaryotic Genome Annotation
                                            Pipeline
            Annotation Method            :: Best-placed reference protein set;
                                            GeneMarkS+
            Annotation Software revision :: 3.0
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA;
                                            repeat_region
            Genes                        :: 3,797
            CDS                          :: 3,699
            Pseudo Genes                 :: 49
            rRNAs                        :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs               :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                        :: 45
            ncRNAs                       :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
                     /mol_type="genomic DNA"
                     /strain="203-1"
                     /sub_species="terrae"
                     /culture_collection="NBRC:15098"
                     /type_material="type strain of Sphingomonas terrae"
                     /db_xref="taxon:1219058"
                     /geo_loc_name="Japan: Kyoto"
                     /collection_date="1974"
     protein         /gene="lysK"
                     /locus_tag="AOA14_17530"
                     /EC_number="6.1.1.6"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_011540775.1"
                     /note="class I; LysRS1; catalyzes a two-step reaction,
                     first charging a lysine molecule by linking its carboxyl
                     group to the alpha-phosphate of ATP, followed by transfer
                     of the aminoacyl-adenylate to its tRNA; in Methanosarcina
                     barkeri this enzyme charges both tRNA molecules for lysine
                     that exist in this organism (but the tRNALysUUU very
                     poorly) and in the presence of LysRS2 can charge tRNAPyl
                     with lysine; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MTDLHLYPSL REPAQTSKAW PFEEARKLIK RYPDGKPGGA PVLFETGYGP SGLPHIGTFN
       61 EVLRTTMVRR AYETLTGGAP TRLVAFSDDM DGLRKVPDNV PNGDMLREHL GRPLTAIPDP
      121 FGKYESFAHH NNAMLREFLD RFGFEYEFVS STERYRSGAF DDALKNVLRH NQDILDIMLP
      181 TLRAERAATY SPILPVSPKS GIVLQVPVTV VDPDAGLVSF EDEGETITHS ILSGGAKLQW
      241 KVDWAMRWVA LGVDYEMYGK DLTDSGIQSG KIAKALGGRK PEGLIYEMFL DEKGEKISKS
      301 KGNGLSIEQW LSYGSEESLA FYAYREPKAA KQLHIGVIPK AVDEYLQMRG SYPAQEPDKK
      361 LGNPVHHVHV ARGQDVPDAV LPVTFGLLLN LVAVMGADAA KDQIWRYLGQ YVAGADAATW
      421 PELDRLIDNA ITYNRDYVAP TLKRRKPVGG EGAALKELDG RLAALPADAS ADDIQNIVYE
      481 IGKNEAYGFE NLRDWFKALY ETLLGSSAGP RMGSFIALFG IDNTRRLIAE ALA
//