LOCUS AMU95865.1 1052 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 hypothetical
protein protein.
ACCESSION CP013342-2896
PROTEIN_ID AMU95865.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_14725"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003040475.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MNKSHLLMGV AAFAVAISAS QPTFAQETST NCADTDDNGV CDKDEASTPA NDGGAIIVTG
61 SRIARANFDT VEPSVVVSSA DIEARGFETL GQALNEQPSF GVPGSSPVGG QSGFGQGQSF
121 VNFLGLGSQR TLTLVNGRRF VGSNTASIFG PTGAGSQVDL NVIPTKLIER VETIAVGGAP
181 IYGSDAISGT INVILKQDYQ GLEIDGQYGL TTRGDAANYR FRALAGYNFA DGRGNITLSG
241 EYNKGEGLTG VDRPLFASGL FFRNASDPSR GFSQQLYADR RLPSISESGT PIVGLADYGL
301 DFNFPDYQGP LFGLPAGFNG AVSNGAGDQL RFDENGNLIP INFGTYAGRP GSFGIDFAGG
361 NGFSLVPTSN LLSETRRYSG IATTKYQLSD SVRFFGEAWY SNSKGRNLRD QPVYNSALFD
421 AAGTPDGNII VSINNPFLSD AARAAIQNSI DNNPFSDQNF LGVTQNYFYL GRANTDLATG
481 NSTGEVEVMR FVAGFDGSFD ALAGTWNWEV VGNYGRSKTS GYSRELVQQN FENAVDAVLD
541 GSGNIVCRPG YTNATIQTVS STCAPLNLFG TGRISQEALD YVSAIARPVS LNKQKVFSAS
601 LSGPLFRLPG GDFSIAVGYE HREESQNFDP GAYFRGELQS DGTYASYGRS VPIQPVIGKF
661 NTDEVSGEIR AELISPSTGT FINLLEVQAA GRWVDHSIAG GDFTWTLGGR VKPIEDFTIR
721 GNFTRSIRAP AITEAFNPSS DFFGFADDPC DEANVNNGPD PATRAANCAA LGLPGDFSSL
781 SSSRSFKQAI AGNPSLNNEK ANSWTVGVVL EPSFIPRFRA SVDYVDIKLK DVISELSGDQ
841 VVANCYDSAD FPSNEFCDRV TRNPFVGDGS QNDGQITFIE TGYFNSAQLR YKGYLAAIDY
901 RLPVPAISSD GQIGINLSYQ YLDELSTRAD ANSAKSRTDG SIGYSKHKGV LTINYSEPAF
961 NLFTQLSYIG KAKIDTQVPD DYYPDGLNNI PSVIFVNMGV NFNVDERFEF QVNVDNVFDK
1021 QPPYPYPASG GTITYFRGLL GRYVRAGATV KF
//