LOCUS AMU95540.1 2496 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 hypothetical
protein protein.
ACCESSION CP013342-2571
PROTEIN_ID AMU95540.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_13070"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_013849588.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MQFEPETTAM RKTANTSLPA ARTAKRQLLQ GCAIAAGLAA LAYGGPALAQ VAGTGTVVSG
61 SATISPPGPG ATTVTTGGSQ TIINWVPTDN APTGGDIDFL PAGNVWNFSG NGNYVVLNRF
121 VNGSGGSLSR QIALSGAINS TDTATGAPGG SIWFYNAGGI LLNSGSAINV GSLVLTANDI
181 DTTGGLFGPG GEIRFRGASG STAAIRINAG ASITADMGAA GGSYVALVAP RIVQDGRVEV
241 NGSAAYVAAE QADIRINAGL FDINVLTGAE GGQVISHSGV TTGPEQQVSG GAQRIYMVAI
301 PKNDAVSMLV SGQIGYQDAV SAVTDSDGAV VLSAGYNITG GAIDTASASS VGANITVNDT
361 LFRSRTFAHA SGDFLGQPID TIPPVGGAFV PPPQLGRILV EGNALFEGDN SATINVGAVQ
421 AVGATGQFIV RSKAASAITV DGGQLAAGTD ILVSASRDAN VVTGVGEGGN ASLTVLNGGS
481 VSANSVTVSA RGLGGFTDSG AGGTGIGGTA SISVSGPGSA MNVGSLIVDA GALGGGAYVG
541 PSGPTVTDDS GDGQGGSATL DISDGATVQA SNFVRVTADG QGETGFVRSG DGAGGTARIT
601 AGGPGTTFIS SSTDINAQGF GGGSQSSSSG SIFSASAGNG VGGTASFSSS GDDSTQIAPG
661 NLYLSASGLG GGANAATGPQ GGDGTGGDAS VSADGAFTLD LNSLIVLANG ENGGASSSGG
721 DTGVSGDSQG GTVSLSASNG ATIDSTFYIQ LDAGGIVSSS ENIGNGQGGG VRIDATSGGS
781 ITTDGMLQMT ADGGSFGGFT VATSGGTGDG GNILINADGG SVGAGYYYLT ANGSSANSAG
841 TTGAAQGGNI DLFALGGGSI SATDPSQFSS FNADGQSGYS VGGANGFGGF IGLHADGGTI
901 DLAGTIRLSM GGYSGGNTDP AGGAVPVGLG GSALIEVLNG GAMTLGDFAA DAEGRGYGNV
961 ESPGGAGTGA ANGVGGDVVI TLSDGTLSAS RFALSANGFG GQPGSGSGTG QGGTISYTQT
1021 GGDASFGDMS ITANGYGGST LTGTGNGIGG TATMTLSGGS FGASTAAAYA EGFGGEGSYG
1081 YDDFSNPVQP AGNGGDGQGG TATIVIDGPI AIDTGTLAAY AGGRGGSGGD FSSLGIAAGN
1141 GGDGGAGIGG QASITITDGS IDTGDLIADA GGIGGNGGNS YDSGSFGAPA GISVGGRGGS
1201 GTGGTATINL ASAVGVADTL TARASASGGL GGYGSVGNDG GAATGGLAQL IVTDFDAGPL
1261 GVVLDATAFG GGGGTGSDGA GGNGGAATGG TARVEATGAN GAASITQANF LASGTGGRGG
1321 DGNSTFFLDT VGPNGGNGGD GTGGTIEAVA SENATLTLAG ANGGPVTLAS GGTGGDGGNG
1381 AFNGEVPGST GGDGGDGGAG SGGVVHLLAN GGTISSAGAA VNIGVAGTSG NGGIGGDGNV
1441 DAGGNGGNGA NGAVFADRGG RIVIEALATQ SGPGAMDLGD TALVASGALA GRIEIRTDGT
1501 IDFASLDAET YGIADPTNND TDVATSGIYV ATTDGTIDVG GDASLRSDGS VGVYGQAAGL
1561 FDITGNLTIE AGDQIDIRHD FGEGTPPTIR TGGDFTATAG SSISGTIGSF LVAGGDLSLT
1621 ATDGPIGVDR LQGSNIFLTA SGAGSVEHAE ADNDFIASAA SFRTGLNSII TGGNIIVTAP
1681 GAVDLGNSTA GGYVSVDGES IQFANIGAGG FVTLNASGTA PGAEGIAGRS IDAGSTIILS
1741 GNSIALTGPV TGAGPLFATG TGGAVSISGA DVAGSIVVDA VGNIGGSYVS GGDIRLTSGA
1801 DINASATANG GYVDPATGAI ADGNIFADAA GNATLTDSGA ARMFGVNAGQ AATVTNATAG
1861 EDMLVLAGTT ANLTNVTAGD DIDVRAAGTV IANGLDATGA GLDGFAINYV PGNGFTFGQG
1921 EGTSSIDGSD INITSSAASI DATNLSAGDD ILLSAATTIA LDGGTTLGLG ITGGDSSIRT
1981 QGGDTVLTNL DAFDDIVATS AGAISGDAIA AGRNLALTAV DAIDFGAITA DGTTTLTSSD
2041 GAVGVDALNA AGPITASGDS IDIRGGAMQF ASLAANVGNA LIRSTGNLSI ASGSVAGSAD
2101 LAATGGSIAL TDLSAGGDLN ATASGAIQVD GVVSGPRIAL TSNDIVIGGQ GRVGTAGTTQ
2161 SLTLTNNGAA PTFVGGNGTQ NGYHADATEM TRLFATNITV NAPNGAAATD LIVDSFTLAG
2221 NTNLGAAGSL TLQTPGRARV IGAVELTGLT SANRLTLSGD DRVEIILGQG SIRLSANGAP
2281 EGVLDLRGND IFVATAAAIT DVEAATSTSA IDTRLAQNDG VTSDEGALFA GGINVTTSRS
2341 FYVQNSGAGT DYAQRRGLTF AAGGLNVDAP SSGVRIVING VRLGANGQVT GLDTIPFLTV
2401 NGSAPTSGTI DMRSTFNGCL IISTGGCTFI DPGNQFPVQD VVEDEVGGDE DGDGGGTGLP
2461 VPLITIRGID PLSGAPLLDD PVTGAGNDDL WTPTTP
//