LOCUS AMU95540.1 2496 aa PRT BCT 21-JUN-2016 DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 hypothetical protein protein. ACCESSION CP013342-2571 PROTEIN_ID AMU95540.1 SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098 ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098 Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis. REFERENCE 1 (bases 1 to 3979087) AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K., Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F. TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC 111660), a Polyethylene Glycol Degrader JOURNAL Genome Announc 4 (3) (2016) PUBMED 27284143 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3979087) AUTHORS Yoshiyuki,O. TITLE Direct Submission JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku University, Katahira 2-1-1, Sendai 980-8577, Japan COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Annotation was conducted using PGAP and MiGAP, and PGAP annotation was curated by referencing to the MiGAP annotation with the aid of annotation support tool of GenomeMatcher software. ##Genome-Assembly-Data-START## Assembly Method :: newbler v. 2.8 Genome Coverage :: 110x Sequencing Technology :: Illumina MiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 11/30/2015 14:33:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.0 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes :: 3,797 CDS :: 3,699 Pseudo Genes :: 49 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098" /mol_type="genomic DNA" /strain="203-1" /sub_species="terrae" /culture_collection="NBRC:15098" /type_material="type strain of Sphingomonas terrae" /db_xref="taxon:1219058" /geo_loc_name="Japan: Kyoto" /collection_date="1974" protein /locus_tag="AOA14_13070" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_013849588.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MQFEPETTAM RKTANTSLPA ARTAKRQLLQ GCAIAAGLAA LAYGGPALAQ VAGTGTVVSG 61 SATISPPGPG ATTVTTGGSQ TIINWVPTDN APTGGDIDFL PAGNVWNFSG NGNYVVLNRF 121 VNGSGGSLSR QIALSGAINS TDTATGAPGG SIWFYNAGGI LLNSGSAINV GSLVLTANDI 181 DTTGGLFGPG GEIRFRGASG STAAIRINAG ASITADMGAA GGSYVALVAP RIVQDGRVEV 241 NGSAAYVAAE QADIRINAGL FDINVLTGAE GGQVISHSGV TTGPEQQVSG GAQRIYMVAI 301 PKNDAVSMLV SGQIGYQDAV SAVTDSDGAV VLSAGYNITG GAIDTASASS VGANITVNDT 361 LFRSRTFAHA SGDFLGQPID TIPPVGGAFV PPPQLGRILV EGNALFEGDN SATINVGAVQ 421 AVGATGQFIV RSKAASAITV DGGQLAAGTD ILVSASRDAN VVTGVGEGGN ASLTVLNGGS 481 VSANSVTVSA RGLGGFTDSG AGGTGIGGTA SISVSGPGSA MNVGSLIVDA GALGGGAYVG 541 PSGPTVTDDS GDGQGGSATL DISDGATVQA SNFVRVTADG QGETGFVRSG DGAGGTARIT 601 AGGPGTTFIS SSTDINAQGF GGGSQSSSSG SIFSASAGNG VGGTASFSSS GDDSTQIAPG 661 NLYLSASGLG GGANAATGPQ GGDGTGGDAS VSADGAFTLD LNSLIVLANG ENGGASSSGG 721 DTGVSGDSQG GTVSLSASNG ATIDSTFYIQ LDAGGIVSSS ENIGNGQGGG VRIDATSGGS 781 ITTDGMLQMT ADGGSFGGFT VATSGGTGDG GNILINADGG SVGAGYYYLT ANGSSANSAG 841 TTGAAQGGNI DLFALGGGSI SATDPSQFSS FNADGQSGYS VGGANGFGGF IGLHADGGTI 901 DLAGTIRLSM GGYSGGNTDP AGGAVPVGLG GSALIEVLNG GAMTLGDFAA DAEGRGYGNV 961 ESPGGAGTGA ANGVGGDVVI TLSDGTLSAS RFALSANGFG GQPGSGSGTG QGGTISYTQT 1021 GGDASFGDMS ITANGYGGST LTGTGNGIGG TATMTLSGGS FGASTAAAYA EGFGGEGSYG 1081 YDDFSNPVQP AGNGGDGQGG TATIVIDGPI AIDTGTLAAY AGGRGGSGGD FSSLGIAAGN 1141 GGDGGAGIGG QASITITDGS IDTGDLIADA GGIGGNGGNS YDSGSFGAPA GISVGGRGGS 1201 GTGGTATINL ASAVGVADTL TARASASGGL GGYGSVGNDG GAATGGLAQL IVTDFDAGPL 1261 GVVLDATAFG GGGGTGSDGA GGNGGAATGG TARVEATGAN GAASITQANF LASGTGGRGG 1321 DGNSTFFLDT VGPNGGNGGD GTGGTIEAVA SENATLTLAG ANGGPVTLAS GGTGGDGGNG 1381 AFNGEVPGST GGDGGDGGAG SGGVVHLLAN GGTISSAGAA VNIGVAGTSG NGGIGGDGNV 1441 DAGGNGGNGA NGAVFADRGG RIVIEALATQ SGPGAMDLGD TALVASGALA GRIEIRTDGT 1501 IDFASLDAET YGIADPTNND TDVATSGIYV ATTDGTIDVG GDASLRSDGS VGVYGQAAGL 1561 FDITGNLTIE AGDQIDIRHD FGEGTPPTIR TGGDFTATAG SSISGTIGSF LVAGGDLSLT 1621 ATDGPIGVDR LQGSNIFLTA SGAGSVEHAE ADNDFIASAA SFRTGLNSII TGGNIIVTAP 1681 GAVDLGNSTA GGYVSVDGES IQFANIGAGG FVTLNASGTA PGAEGIAGRS IDAGSTIILS 1741 GNSIALTGPV TGAGPLFATG TGGAVSISGA DVAGSIVVDA VGNIGGSYVS GGDIRLTSGA 1801 DINASATANG GYVDPATGAI ADGNIFADAA GNATLTDSGA ARMFGVNAGQ AATVTNATAG 1861 EDMLVLAGTT ANLTNVTAGD DIDVRAAGTV IANGLDATGA GLDGFAINYV PGNGFTFGQG 1921 EGTSSIDGSD INITSSAASI DATNLSAGDD ILLSAATTIA LDGGTTLGLG ITGGDSSIRT 1981 QGGDTVLTNL DAFDDIVATS AGAISGDAIA AGRNLALTAV DAIDFGAITA DGTTTLTSSD 2041 GAVGVDALNA AGPITASGDS IDIRGGAMQF ASLAANVGNA LIRSTGNLSI ASGSVAGSAD 2101 LAATGGSIAL TDLSAGGDLN ATASGAIQVD GVVSGPRIAL TSNDIVIGGQ GRVGTAGTTQ 2161 SLTLTNNGAA PTFVGGNGTQ NGYHADATEM TRLFATNITV NAPNGAAATD LIVDSFTLAG 2221 NTNLGAAGSL TLQTPGRARV IGAVELTGLT SANRLTLSGD DRVEIILGQG SIRLSANGAP 2281 EGVLDLRGND IFVATAAAIT DVEAATSTSA IDTRLAQNDG VTSDEGALFA GGINVTTSRS 2341 FYVQNSGAGT DYAQRRGLTF AAGGLNVDAP SSGVRIVING VRLGANGQVT GLDTIPFLTV 2401 NGSAPTSGTI DMRSTFNGCL IISTGGCTFI DPGNQFPVQD VVEDEVGGDE DGDGGGTGLP 2461 VPLITIRGID PLSGAPLLDD PVTGAGNDDL WTPTTP //