LOCUS AMU94501.1 918 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 bifunctional
uridylyltransferase/uridylyl-removing protein protein.
ACCESSION CP013342-1524
PROTEIN_ID AMU94501.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_07765"
/EC_number="2.7.7.59"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003042285.1"
/note="catalyzes the uridylylation or deuridylylation of
the PII nitrogen regulatory protein; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/transl_table=11
BEGIN
1 MSDIFSDLPH RRAIIDRRLL ADRLDAIAAE TADAGKRRGA MVALLKEALE EGRAEIARRL
61 LDHPSSGRVA AQATAFLIDQ IVRLSYDFTV DYLYPASNRS AGERITVIAV GGYGRAEMAP
121 FSDVDIGFLT PFKQTSWTEQ VIEAQLYTLW DLGLKVGHSS RSLDEMVRTA KDDLTIRTAL
181 LEARFIWGER ALYDQAAARF DAEVMAGNAR AFVAEKLAER DERHKRMGDS RYVVEPNVKE
241 GKGGLRDLHT LFWIGKFIHR VRTVPELVDA GLLSARELRQ FSRAENFLLA VRCHLHILAG
301 RAEDRLTFDF QREIAARMQF ADRPGKSPVE RFMQLYFLHA KSVGDLTGTF LAHLDEQLAA
361 RGRRFLPTLR RRPGRLNGFV LDRGRLALPS DDYFREDPVR LLEIFQLADK YGLEIHPQAM
421 RQARHDAKMI DGKVRRIARA NALFLDVLTS PRDPETVLRW MNEAGVFGRF VPDFGRVVAQ
481 MQFDMYHHYT VDEHTIRAIG LLSDIEQNRL KDDHPLSTAI MDQIHSRRVI YVAVLLHDIA
541 KGRGGDHSVL GAELALRVCP RLGLNEAETE TVSWLVRHHL LMSATAFKRD LADFKTILDF
601 AQLVQSPERL RLLLVLTVVD IRAVGPGVWN SWKRQLLTEL YDAAEEVLRL GHKQRGREVR
661 IATKKEEAQA LLQMGDKDFG KLAKRLPESY WIAEPVEVIA ANLIHIQKSS GAPLHIAAVP
721 DDDRGATLVM VLAADHPGLF YRIAGGIHLA GGNIIDARIH TTRDGLALDN FLVQDPLGRP
781 FAEAEQIVRL TRAIEDALAN RHKLLPKLEA RALPRTRAEA FRIAPNVFID NKASNRFTVI
841 EVNAQDRPAL LNQLAYALFQ SKVTVHSAHV ATYGERAVDT FYVTDLIGDK IDSAARVKSL
901 EKRLLEAAAS RSEEAVAA
//