LOCUS AMU93461.1 538 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 histidine
kinase protein.
ACCESSION CP013342-473
PROTEIN_ID AMU93461.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_02440"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003040340.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MARGIASPMM ADASIAEQEE APLVWSARWS LTTRILAVNI LAIALLAGGF FYLDTYRTRL
61 VDTRISEMQD QLGLLDSALE AARPDQRARL IGEFTRTTES RLRFYAADGR KLSDSFDHGP
121 PTYTLRDPDL QAWQRDAARA MDRGIDWIVG APSYPEYTEP AHDTLAAWPE AEATLRSGEA
181 QARFRYAPER TPLLSATRVV DLETPEVMLM TLNARDITRT VRAERFRLAI VIAMVVIASV
241 LLSLFLARTI VRPLRRLARA AVRVRLGRAR EVVVPRLPSR RDEIGTLARA LSDMTQALRE
301 RIDAGEHFAA DVTHELKNPI ASVRSAIEGL GRVTSDAQRT QLLAIADEDV RRLDRLVTDI
361 SDASRIDAQL SRASFEPVDV GLMIESMLAA RCARNSQSED RPRIAFARPR KGTTAVMGDG
421 HRIERAIDNV IDNAISFSPA GGLVCIAATR LGDEVHVRVD DDGPGIEPSQ REAIFRRFHS
481 ERPSGEAFGK HSGLGLAIAR TIIEGHGGTI SARDRDDGRP GASLLITLPA REGSDPTG
//