LOCUS AMU93406.1 980 aa PRT BCT 21-JUN-2016
DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 peptidase M16 protein.
ACCESSION CP013342-418
PROTEIN_ID AMU93406.1
SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098
ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingopyxis.
REFERENCE 1 (bases 1 to 3979087)
AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC
111660), a Polyethylene Glycol Degrader
JOURNAL Genome Announc 4 (3) (2016)
PUBMED 27284143
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3979087)
AUTHORS Yoshiyuki,O.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotation was conducted using PGAP and MiGAP, and PGAP annotation
was curated by referencing to the MiGAP annotation with the aid of
annotation support tool of GenomeMatcher software.
##Genome-Assembly-Data-START##
Assembly Method :: newbler v. 2.8
Genome Coverage :: 110x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/30/2015 14:33:14
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 3.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 3,797
CDS :: 3,699
Pseudo Genes :: 49
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098"
/mol_type="genomic DNA"
/strain="203-1"
/sub_species="terrae"
/culture_collection="NBRC:15098"
/type_material="type strain of Sphingomonas terrae"
/db_xref="taxon:1219058"
/geo_loc_name="Japan: Kyoto"
/collection_date="1974"
protein /locus_tag="AOA14_02165"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003040179.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MSVSPPSTAR RSLSLFLLPA CASALALLIA PLATAQSTPA PAAASTLAGQ ASDWLYEGSD
61 IPRDEGWRFG VLPNGLRYAV RNNGVPPGQV SIRVRMDVGS MFESNSERGF AHLLEHLTFR
121 GSLHIPDGET KRIWQRFGVT FGSDSNAQTT PTQTVYQLDL PSVTPTTLDE SMKLLSGMVR
181 EPRITDAAVT AERGVVLSEL REQDGPQKRI ADATSGHLFA GQLLGERSPI GTTAALGAAS
241 AKSVQAFHDR WYRPDRAVVV MVGDGDPAQF AALIGKYFGD WKEPGPNPAQ PDFGKPDPSQ
301 PVAKEIVEAN QPLALTLAMI RPWKKRIDTV ENTRRLYLEY LAQALVNRRL ENRARSGGSY
361 LVATVSQDYV SRSADVTSAE IVPLGDWKAA LADVRGVIAD AVQTPPSQAD IDREANEIEA
421 FLRKELENAP NEPGSRLADD MVRAVDIGET VTSPKGQVDM FAAIRASATP QVMLDISRAI
481 FAAPVTRLVL TTPTPIEGGD KALLAALAAP VTARDDRVAA AKVDFSQLPA LGHPGTIESE
541 TPLPGLHVQR LEFANGVTAL VADNKVEPGK VRVNVRFGSG NRSVAGNAPN LLWTGDYALM
601 ASGVGPWGQN ELDQATNGRQ IQMGFDIDDD AFEMTAESNP ADLRDQLRLM ATKLAAPRWD
661 ASPIERLRVG LLTGFDLNDA TPNAVLDRNL RGWLAGGDTR WAPPSRAAIE GLTPAAFRAF
721 WEPRLKSGPI EVQIFGDLES VDYKQLLAES FGALAPRQPL APAGGQSVAF AQHNAKPFVA
781 YHTGDKGQAA AMIAWPTSGG IDNMRDARAM DVLAAIFNDR LFDRLRAEQG ASYGPVVDSH
841 WPTGFEKSGG YLLVGSLLAP KDVNRLYSIA DDIAADLVAR PVSADELARN AGPIREQVAR
901 ATTGNLYWMY LLEGATRDPR YIKAAMAIED DVTNISAADI QRLARQYLVP GRKWSLAVLP
961 KGMTLAQAAA LDGGAIGGGK
//