LOCUS AEG53703.1 885 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 MscS Mechanosensitive ion
channel protein.
ACCESSION CP002781-1928
PROTEIN_ID AEG53703.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_1979"
/inference="protein motif:PFAM:PF00924"
/note="PFAM: Mechanosensitive ion channel MscS; KEGG:
smd:Smed_1800 MscS mechanosensitive ion channel"
/transl_table=11
/db_xref="InterPro:IPR006685"
BEGIN
1 MHLFAVMHVQ TGNWQSSERF CAAQGLSKGR KLHLLEKLRA LSIALSFGAL TLAAGGSAVA
61 QEPEPSVEQT RPAQQAAPAQ PLQPAQSVQP APQAEPAQPA TQTGTGQAPD AASPVLQQAE
121 DQLAQADREL KRLIERTNAV EDDDAMLAEL RVQVDELSKQ IIAASVPTRP RLDEIKARLT
181 ELGDPPGEGQ PPEDAVITDE RKRLLAERGA INALTGRAEN LSVEARKLAN RITATRRAIF
241 SNTLLRHTDV SAAMLSEAVT ATMHEAMALS RSIGGWLTFA WNYKRVPLLS AIFLSLCAAL
301 LFLVGGYRLF SPVLMRHEED DEPTYFRQLS LAFWSTLIPT LALAAFAMSS YFFLSSFNVL
361 RPDIAPIVAI TLAMGVVLFF IARLAGAVLS PNRSSWRLVR VSDRGAKMLM VPIFAMALVN
421 GLDYLLGSIS ESLGSPVVLT IAKSFVASII IGLILMSMAW IRPVLRADEP YDAPGRPWPR
481 VISLSFLLLG AALIATALSG YVGLARFIAT QITVTSAILV TVYIGLLTGK SVSKQGAFAE
541 TVAGRYLERR FHLEPVALDQ FGLFAGLGIY VLVLSFFIPL ILMQWGFKTA DIESWAYQVL
601 TEIRIGTITI SLVGILAGVL LFALGFLVTR WVQRWIDGNV MARSRVDAGV RNSIRTGIGY
661 MGVGIAGLIG LSAAGIDLSS LALVAGALSL GVGFGLQNIV SNFVSGLILL VERPFKVGDW
721 IVSGTTEGFV RRISVRATEI ETFQHQSIMM PNSLLINASV GNWTHRNKLG RSEIAVTVTY
781 ASDPRRVIEL LYEIAAAHPM ILKNPAPNVG FTAFEDERMT FELRIYVADV LTAGGVRNDL
841 RVSIYERFRD EGIGAPFPMK IEDVTPEEEA GSAGPEPSVM EKEKA
//