LOCUS AEG53215.1 1163 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 carbamoyl-phosphate synthase,
large subunit protein.
ACCESSION CP002781-1440
PROTEIN_ID AEG53215.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_1471"
/EC_number="6.3.4.16"
/inference="protein motif:TFAM:TIGR01369"
/note="SMART: Methylglyoxal synthase-like domain; TIGRFAM:
Carbamoyl-phosphate synthase, large subunit; KEGG:
smd:Smed_1257 carbamoyl phosphate synthase large subunit;
PFAM: Carbamoyl-phosphate synthetase, large subunit,
ATP-binding; Carbamoyl-phosphate synthetase, large
subunit, oligomerisation; Methylglyoxal synthase-like
domain; Carbamoyl-phosphate synthase, large subunit,
N-terminal"
/transl_table=11
/db_xref="GO:0004086"
/db_xref="InterPro:IPR005479"
/db_xref="InterPro:IPR005480"
/db_xref="InterPro:IPR005481"
/db_xref="InterPro:IPR006275"
/db_xref="InterPro:IPR011607"
BEGIN
1 MPKRQDIKSI LIIGAGPIVI GQACEFDYSG TQACKALKEE GYRVILVNSN PATIMTDPGL
61 ADATYVEPIT PEVVAKIIAK ERPDALLPTM GGQTALNTAL SLRRMGVLDR YNVEMIGAKP
121 EAIDKAEDRA LFREAMAHIG LETPKSRLAN ATDIKDHDRK SHEAERSALK AKLSGDELDK
181 ALDELENQWN LGEGDRKQRY VNHAMAIAAQ ALDDVGLPAI IRPSFTLGGT GGGIAYNRSE
241 FFEIVGSGLD ASPTTEVLIE ESVLGWKEYE MEVVRDKADN CIIICSIENI DPMGVHTGDS
301 ITVAPALTLT DKEYQIMRNA SIAVLREIGV ETGGSNVQFA VNPENGRLVV IEMNPRVSRS
361 SALASKATGF PIAKIAAKLA VGYTLDELEN DITGGATPAS FEPSIDYVVT KIPRFAFEKF
421 PGAEPTLTTA MKSVGEVMAI GRTFAESLQK ALRGLETGLT GLDEIEVPDF DDNGDGRNAI
481 RAALGTPTPD RLRMVAQALR LGMSEAEVHE ACKIDPWFIA QFKAIVDMEA RIREHGLPAD
541 AENLRMLKAM GFSDARLATL TGKRPKEVAE LRNALNVRPV YKRIDTCAAE FASPTAYMYS
601 TYETPFVGAA RSEAQVSDRK KVVILGGGPN RIGQGIEFDY CCCHAAFALK DAGYEAIMIN
661 CNPETVSTDY DTSDRLYFEP LTAEDVIEIM RAEQENGTLH GVIVQFGGQT PLKLAEALEK
721 NGIPILGTAP DAIDLAEDRD RFQKLLMKLD LNQPNNGIAY SVEQARLVAG EIGFPLVVRP
781 SYVLGGRAMQ IIHSESMLQS YLLDTVPGLV PEDIKQRYPN DKTGQINTLL GKNPLLFDSY
841 LTNAIEVDVD CLCDGKDVFV SGIMEHIEEA GIHSGDSACS LPVHSLGKDM VDELERQTGA
901 LARALNVGGL MNVQFAIKDG TIYVLEVNPR ASRTVPFVAK TIGAPIAKIA ARVMAGEMLD
961 EAIAAYGKKP DPRNLKHIAV KEAVFPFARF PGVDTLLGPE MRSTGEVIGL DTDYALAFAK
1021 SQLGAGVDLP RDGTVFVSVR DEDKERVLPA IRILSDIGFK VMATGGTARF LGEQGIVATK
1081 INKVLEGRPH VEDAIRNRQV QLVINTTDGN KAISDSKSLR RATLMQKVPY YTTMAGAEAA
1141 ALAIKALKAG NLEVRPLQSY FEA
//