LOCUS AEG52171.1 1862 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 adhesin HecA family protein.
ACCESSION CP002781-396
PROTEIN_ID AEG52171.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_0408"
/inference="protein motif:TFAM:TIGR01731"
/note="KEGG: xtr:100498028 hypothetical protein
LOC100498028; TIGRFAM: Adhesin HecA 20-residue repeat x2;
PFAM: Domain of unknown function DUF637,
haemagglutinin/haemolysin putative"
/transl_table=11
/db_xref="InterPro:IPR006915"
/db_xref="InterPro:IPR010069"
BEGIN
1 MPSLSTASTR PIPSPAAPGI CRSSVATAGT IVADRTLEIV ADSGGIGNSG TLIGGSARFE
61 TTAAFRNDGD TLTIAAAAPF INAAALVSGR DLAIYNDQIL NNGGVIWANG SITLAANAAL
121 DPADVVQNTD GHIEALQGDL TIRANEVYNV GTAPTIGSSQ IIKWLEKGSA GTTEPAEEIL
181 KLIDPAYLDA DGNIKPSHAG AYAALWADLV SGGSLLSATS RSIVKPSVTT PSGTALAAAF
241 AGIWSDMLAR ANAAGTPDPA AAIKELVSDT AFASNGDILP QNAAAYAALW DTLASGGTSV
301 TDDVKAILKP TSLEIEGTGT DPATGETATV YSNRLVAAAT SPWSAMTAGS GAAYDIVKIL
361 YQDRFQDDGV LAELVAGGSI DIKAGKVENI YGNISAAENI VITADDVKNQ ALGASQFLVE
421 VHKRPDCFTC HEGKVEFYDT FGGRIEANGT VAISGNLENI TLPSSELSTK DVLDKLNAYI
481 AERQAAGDPD MAGVPPASDK NFELTETRTD DYTAPVAGNG SEVRKVEGTD LGSETKVDTG
541 PPAKFDPLSP IAVNRYGPVV VDPLAPVAVD RPAPASVALP GTPTVIPVDT AVLSEKLLPV
601 VPLRPSLSPT ASVDALLVAG LTTLAETDPE FTQYANFVTS DYLMSEGRLA YRDDLVNNGR
661 ETILAALKRA GERVPVPAFD YLDKPVQVPA PDGSGSRTVY PKAVPLSLDA TGALIQGRDV
721 AIASGSLTSS GTIAGSRSLT VSAGTVSVDS GRLIAESGAL TLSALDAASF ENATISGGSV
781 ALVTGGELLA AGTSIVSAGD LSIYGNAGVT LTGLERSFAG TWANGTFETV DQQLSTLQSG
841 GDLAIVSGGA LTLAGVTGDA AGALSLAAAG DLVLSAVEST TAFQRSGRRS SLDISTVASS
901 ATKLNAGGDL SALAGGSAVL VGTALDSGGS IRLAAKDEVV LAAAQDIYSY DAKTQKKSLF
961 KKKSTSVSKA RVTNEGVSVA AAGDVDVVAE TGDFVTAGSR FVSAGGDIGL SATEGDIYAG
1021 AYTDIFQESR TTKKSYFFGL FGSTTNSSTE SRFSTGTDAL AALDLTLVSG ADTTLVGAHL
1081 AAGGNLSVDT GGDFKVEAAI DSERKAFFSN NLGLVTMTTI TERSFRETAK LSSFEAGGAV
1141 DFSIGGQASL SLYHQAGVDP ANPGDLYPEE LLAIAGLAFI EAGLANEYFY DKQVALSPAF
1201 KALVAVAVAN FVAPAIVGTV LPGLSGWAVA AAEAFTSSFI VESLDGIVSG NYDIGEILKG
1261 AAFSGATAGL KDAVNLSALG IDTEGLLNES LLGGFGNGQL TLGGILDGAL DGAIGSGLTS
1321 LVYGTDFGSG FSHALLSTVV NLALADVQGG IGDLGLGEGT LPSALLHGLA GCAAAEAQGG
1381 NCAAGAAGAV AQSFFAGSLK RTTLSDQEQR DRAELIGAVA GYLLSGGDAD NVNLAAAIAV
1441 SALTNNRQLH RTEVEWINEN AGAFISWMCR MKNVCDLTRE QALGILAAET LDGVSDAFGV
1501 YGGPGRRANY KDEARAFIAQ SYVGPIYVDG QTMFGQLDSG SSEYRNTLLN AETALSNLAL
1561 YDYATAQSAW PQDYTAAMSF LHEALNDFAD VPTSIEAQAF VAALSSSPDR TRSIFAAYGA
1621 SNIRAAEPTI AAAYGIKKLL AALPSESRSA AAIGFAEGTT GRTGLTPEEV ENAVLNGTWG
1681 PVADVALEEA LFGDLLTRGM TVVALSSGRR VLQDPDGKQY DTVAEARQAV EAPDTGPRLT
1741 IRGHYKHHKA MTDDLKAQLE SQGYRVSKEE LSFGSSCGTG RCRPDIVYQA PDGKWGIIEV
1801 KTGDASLTFR QEEIYPQIDS GDAIPRGKVA NTFGLKPGIP LKNQGYPNGI PIEIKTFPGA
1861 EQ
//