LOCUS AEG52023.1 602 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 phage/plasmid primase, P4
family protein.
ACCESSION CP002781-248
PROTEIN_ID AEG52023.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_0254"
/inference="protein motif:TFAM:TIGR01613"
/note="TIGRFAM: DNA primase, phage/plasmid; PFAM:
Phage/plasmid primase, P4, C-terminal; KEGG: bbt:BBta_6606
putative phage / plasmid primase P4; SMART: Phage/plasmid
primase, P4, C-terminal"
/transl_table=11
/db_xref="InterPro:IPR006500"
/db_xref="InterPro:IPR014818"
BEGIN
1 MAERKKRPTL PEDVAQKLEE FSAQREPENP ETPLGPSDEP PAHLSADLEP DEAAVEYCAE
61 FDHSDTDNGK RLITHFGTDF IVLAQEKAKQ PAFAVWTGSH WDVSNGGPKA TAIAQRLGDR
121 IAREVAYIKP NAFEQMLIDK AIEARKKPEE DRNPTEKRLA IAAEKAEEAH GKRVKRRLDH
181 AVTSKNVAKM QAALSCAAPH IMRSPNDFNA NRMMVAVQNA TLVFHRKTER RKNPRHKSVS
241 ETPDAPEYID ACVDSSLEVI PGHRRRDMIT HIVPVRYRPE AKCSKWMAFI ESKLPDKDVR
301 RLVQVSSGLG LLGITVQYLF FHYGDGANGK SVYMETLCRL LGDVAVTLPA TSLIGEGGSS
361 GSASPDLARL HGRRLLRVKE LPEGEDLREN LVKELTGGET ITARDLFSGY TDFLPIFIAI
421 MSGNGYPRIT GTDDGIWRRM AVIHWPNKIA KEDRREFEEI VSSFEPEHPG ILNWLIEGAH
481 IFLREGLVIP EAVEKATQEY RDDMDRTAGF VGRCIERDAN ADPLQGKDLY QAYCDDTVDQ
541 GGKPMNVTAF GRVMSKKFRK ERTATGVVYF GVRLKNVPSG SSMRGPPAGR FDPNEPWPDD
601 LP
//