LOCUS AEG51991.1 2504 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 Polyketide synthase protein.
ACCESSION CP002781-216
PROTEIN_ID AEG51991.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_0220"
/EC_number="1.6.5.5"
/EC_number="2.3.1.94"
/inference="protein motif:PRIAM:2.3.1.94, 1.6.5.5"
/note="PFAM: Beta-ketoacyl synthase, N-terminal;
Polyketide synthase, KR; Beta-ketoacyl synthase,
C-terminal; Alcohol dehydrogenase, C-terminal;
Phosphopantetheine-binding; Acyl transferase; Alcohol
dehydrogenase GroES-like; KEGG: smd:Smed_0197
beta-ketoacyl synthase; SMART: Polyketide synthase,
enoylreductase; Polyketide synthase, acyl transferase
domain; Polyketide synthase, dehydratase domain;
Polyketide synthase/Fatty acid synthase, KR"
/transl_table=11
/db_xref="InterPro:IPR006163"
/db_xref="InterPro:IPR013149"
/db_xref="InterPro:IPR013154"
/db_xref="InterPro:IPR013968"
/db_xref="InterPro:IPR014030"
/db_xref="InterPro:IPR014031"
/db_xref="InterPro:IPR014043"
/db_xref="InterPro:IPR020801"
/db_xref="InterPro:IPR020807"
/db_xref="InterPro:IPR020842"
/db_xref="InterPro:IPR020843"
BEGIN
1 MTVEIIGRAC LAPGAKSPQA LFKILRQGKC TVTRVPSDRW DLARFWHPVM GTPGKTYSFA
61 AGVLDHIYDF DPAVFGMSQR EAMYMDPQQR VLLQLAWRAL EDANISVASL HGENVGVYVG
121 ASSLDHANLT VDDPAAAGPY FMTGNTLSIV SNRISHVFGL SGPSMTVDTA CSSSLVALDQ
181 AMRALNAGEI DTAIVGGVNI LAHPLPFVGF AQARMLSPEG LCRAYDNDGA GYVRAEGGVV
241 FVLRRTDRAQ RERDRSYARI VASGVNSAGR TNGISLPSRE AQANLLRMIY EGNGIDANQV
301 AFVEGHGTGT KVGDPAEVWS IGTVIGAKRR APVPIGSIKS NIGHTEPASG LFGMMKAVLA
361 LENNYLPASL HFETPNEQID FDGLNVRVTA NPIELLKGKR ARLAGINSFG FGGANAHVVI
421 SDPDPAQAEK AATSPAGHVF LASAHTASSL ENLLRDYKAA FAGATKEETR AIVAASGANR
481 THMRHRFAAR SDHPEDIVRA IANHLEKPGS DIGETGEAAA KEAKVAFVFS GNGSQWAGMG
541 VEAFRENLHF RQSFTSVSAL FRFHSDIVLT DLLTDPELDR KLADTKVAQP LLFAIQAALS
601 DSLVAMGIKP TAVFGHSVGE IAAAYAAGAL SLVDAVSIVA KRSLHQDLLA GQGTMAAVML
661 GEEAAKAFAA ERGLDDVCVA AINAHNSVTI SGPANEISAF RDAARKAKIP VQILDINYPF
721 HHPIIDRAKE AFLSDIPDIA PRRTELAYLS TVTGAALDGT ALDPDYWWKN VREPVRFQAA
781 AEAALDLGCM LFIEISPRPI LGSYVKETIK QAAVPASVVA TLLRDAGANG HDPISASMAR
841 AVAHGAAVDR SRVYGKRDAF IELPALPFEP VELRPAATTD ATDLFGRSAK PYRLNGWRGD
901 PNAGSWKNHV DAHLFPDLAE HVVDGKAILP GSGFIEIAVS AAQQYHGSDE VEITNLEIVR
961 PLELSDSRIM ELSTILSPET GDIEIRSRER LSEDDWTVHA VARSRKPLPT TSNDCPSTKG
1021 LAKTATVTAA KAYETAKQFG LDYGPQFQLL SKAVAYGDRL IDVELKHPRA SGHPHVTYAL
1081 HPISVDATFH GLVALFDRFT GDRGGAPYIP VRFGSVRVVN AGRPIARATI EIERVSANSI
1141 KARFHFFDET GVAIAHFEDC RFRRTYLRKH KTLEGLSFHY EAVLSDVVMP GTKVATAMPA
1201 TLAEPIDDNG VDNATLLFNA AIYRACQEIA LKLGRGTATV RGDALPGDFA FQCFLTSCLL
1261 TLEDAGLCEH QNGNWKVARE FSLPTVPEIL GELYGDRPDR AVEAVLVNNA YAEALSRLDA
1321 LLGPVRAGDD AVSFNAGFIS EATLDHQAVH SVASRSRMDQ VLHTVEHVLA AQPAGARLRL
1381 IELGSVSAGF SRRLADLAAR NGAALSIFEP RDNAQRNLEI AFEEDAHVRV LKKSEFADIG
1441 PFDLAVSASD NLYQVIEEES GVRTALRSMP PGSGLVAAVS APSIFADFAL GLSGGWFERS
1501 QTAEFPIGRI AAVPHWQKCL ADLDLGDVVV TDRECPHGNT ILIEARGTAA AGAGAEPGET
1561 TTPYLLIETA TAQKPVAAGG RSAAPVRVTG DLAADMATLR AALEAMGDRP VRAVFMSEAE
1621 RAVGDGSALL QTRVLALSAF AEALKQHLAG VEPEGDDRPR LVLVAPGGAP LSASAGSGLN
1681 SGLWAFARVL QNEYEFIDVH TLDLAGDADI GRKDMLAAAL PLLTVSGQNR EWLLDRKTGL
1741 LSELRAVPGA TNKADGKTNA FAAATIRQRV SSQVASIAWE EASVPEPGPN EVVVAVAATG
1801 LNFRDVMWAM GLLPEEALED GFAGATIGME LSGHVVAVGE EIDDLAVGDA VMAIASAAFS
1861 THAVVARAGI AKLPRALSPV AAATLPVAFL TAYYAIVELG RIQAGETILI HGAAGGVGLA
1921 ALQVAKLKGA KVIATAGTRE KRRFLTMLGA DHVFDSRSLG FVEDVRSVTG GEGVDLVLNS
1981 LFAEAMEQSL SLVKPFGRFL ELGKRDYYAD SKIGLRPFRR NVSYFGIDAD QLLVNAPDLT
2041 RRIFMEIGAL FEEGKLTPLP YRAFDYDEIG NAFRLMQNAG HIGKIVVLPP VAGRHEVTAK
2101 AVRGMKVDPD GVHLVVGGIG GFGLVAANWL VEKGARRIAL CSRRGQPDAE TRAMIERWQN
2161 GGVAASVHAC DITDAAAVET LLATLRSEAP LRSVVHAAMV LDDALIGNLS RERNRPVIET
2221 KAKGAAILDR LTRGDRLDNF ILFSSATTLV GNPGQANYVA ANGYLEGLAR ARRQEGLAGL
2281 AVGFGAIADA GYLTQNADVN DLLAKRIGKT ALKAQVALDM VENHVAADPG TVDAAVVMIS
2341 EIDWTAARNL PVARNALFEV ILRSADQHAA GAEGTTMDLV AMIEGKSPQE AEDILFDLVA
2401 GEIAAILRVS KDTVTRGKIL KEIGLDSLMA VELGMSFQQN TGFDMPLSGV ADNTTVGDIA
2461 RKLHEKVSKR DQGNENENEA GDDKLVTELT QRHVGADKEK ALSQ
//