LOCUS AEG51868.1 1468 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 YadA domain-containing protein protein.
ACCESSION CP002781-93
PROTEIN_ID AEG51868.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_0095"
/inference="protein motif:PFAM:PF03895"
/note="PFAM: YadA-like, C-terminal; Hep/Hag;
Haemagluttinin motif; KEGG: ara:Arad_8991 rhizobiocin/RTX
toxin and hemolysin-type calcium binding protein"
/transl_table=11
/db_xref="InterPro:IPR005594"
/db_xref="InterPro:IPR008635"
/db_xref="InterPro:IPR008640"
BEGIN
1 MAVLRLSCRV PGFGRGRGIG LLGARAGAGR GGWMSGVTGA AVAVAMAVGL APTALAQEQP
61 TAISGTNNNG NEGALGASAQ GCTGNTTSNG NPGMPADTDF QDQYCSTALG AGAKAGMPGD
121 GSVAFVGTAI GSKSVAEQFG AIAVGGKANA AGYSGVAVGT YAQALGSRSL AFGRQAVSAA
181 YSSVALGYVS YAQSEGAVAI GNSAWAANNR SIAIGGAVER DANGQLVTNW SAAEQTKAGG
241 SQSIAMGVRA RTKSLVVDDP DTVANEADPG GASDAIAIGT DAQANGDRSL AIGRQNQAGN
301 EQSIGIGAGN TATGKLSIGI GSSNVASGEQ SLSLGAGNNA LGQGSISIGT ETTAGGLRSI
361 AFGVRASTKE ANLDIPDDVA AIDAIAIGTN TMANGDRSVS IGTGSQASSG AVSIGDAAKA
421 VGDKSVSIGT ESWADGDESV SIGLVNNAGF EGNDRIKGGQ TSVSLGAFNQ SPGIEAIAIG
481 ARNEANADRS IAIGSRAKTK AADPAQADGG ARDAVAIGTD ALANDDRSIS IGWNSSTSLN
541 DSISIGTRAT SGSAGDIMIG TGSGTGSTSG QNNVALGVAA SQKVKGSSNI AIGDSAGGYR
601 EGDNNVAIGT NAGIQFSESE HETAVRADLV VSDAVSIGNE ALASADEAIA IGTGAVASGL
661 KSISIGVGNT VSGASSGAIG DPTDITGTGS YSLGNDNTIA ADNAGTFGND NTLADAADGS
721 RVIGNGNNID VSDAFVLGNG ADVTEAGGVA LGSGSVSDTG ADVAGYVPGG ASTADQNAIE
781 ATQSTRGAVA VGNPDAETGV YRQITGVAAG TADSDAANVA QLKSVETIAK TGWKLTTDSG
841 SIDGIGPGDE LVLKGGDGNI VISNQILSND VSIDLADEIE VNRVTARDPD TGASTVLDEN
901 GLSFTTQDAN GEDTALGPRV TAAGIQAAGK ITNVAAGEAD TDAVNFSQLR QVETASGNTD
961 QRAVKYDWTD ANTNGVIDEG ELNLDSVTLA GGTGGTRISN LAPGALSAAS TDAVNGSQLF
1021 GLRSRVSNVA VALGGGAAYD PVKDEWIAPK YTIGGTDYSN VGDALAAVGG TAGAGWSLSA
1081 QGANASNVAP GETVDLRNGD GNIVVSKAET GDTVSFDLAD DLDVAESITV GADPADPNAP
1141 TTVITGGSIV IGGTMLGSNG LVITGGPSVT TDGIDAGGMK VTNVANGTVA KDSKDAVNGD
1201 QLFDVVAKAT ANGVGYDDKS KGTLTLEGAD GTKITNVAAG DLNANSTDAV SGSQLYATNV
1261 KVDRLDTEVK EIDSRVTYIE SFQGDLENAA VYDTDAAGKR LNTLTLEGGD PNKPVLIANV
1321 AKGVKATDAV NVGQLDESVA ESKSYTDEKT EWAIDQAAIY TDQVIETKVS AVNNYAQQRF
1381 AQLSGEIGQV RGEARQAAAI GLAAASLRFD NEPGKLSVAL GGGFWRSEGA LAFGAGYTSE
1441 DGRVRANLTG AAAGGNVGVG AGLSITLN
//