LOCUS AEG51868.1 1468 aa PRT BCT 08-JUN-2015 DEFINITION Sinorhizobium meliloti AK83 YadA domain-containing protein protein. ACCESSION CP002781-93 PROTEIN_ID AEG51868.1 SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83) ORGANISM Sinorhizobium meliloti AK83 Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium. REFERENCE 1 (bases 1 to 3820344) AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A. TITLE Replicon-dependent bacterial genome evolution: the case of Sinorhizobium meliloti JOURNAL Genome Biol Evol 5 (3), 542-558 (2013) PUBMED 23431003 REFERENCE 2 (bases 1 to 3820344) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I., Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83 JOURNAL Unpublished REFERENCE 3 (bases 1 to 3820344) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I., Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4086303 Source DNA and organism available from Emanuele G. Biondi (emanuele.biondi@unifi.it) Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sinorhizobium meliloti AK83 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Host, Plant root, Root nodule, Soil num_replicons :: 5 ref_biomaterial :: Missing biotic_relationship :: Symbiotic trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05780 Current Finishing Status :: Finished Funding Program :: DOE-CSP 2009 Source of Isolate :: Biondi, Emanuele (Universita di Firenze) Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25 - 30C Gram Staining :: Gram- Symbiotic Relationship :: Mutualistic Diseases :: None Phenotypes :: Nitrogen cycle, Streptomycin resistant, Symbiotic ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Sinorhizobium meliloti AK83" /mol_type="genomic DNA" /strain="AK83" /db_xref="taxon:693982" /chromosome="1" /collected_by="Emmanuele Biondi" protein /locus_tag="Sinme_0095" /inference="protein motif:PFAM:PF03895" /note="PFAM: YadA-like, C-terminal; Hep/Hag; Haemagluttinin motif; KEGG: ara:Arad_8991 rhizobiocin/RTX toxin and hemolysin-type calcium binding protein" /transl_table=11 /db_xref="InterPro:IPR005594" /db_xref="InterPro:IPR008635" /db_xref="InterPro:IPR008640" BEGIN 1 MAVLRLSCRV PGFGRGRGIG LLGARAGAGR GGWMSGVTGA AVAVAMAVGL APTALAQEQP 61 TAISGTNNNG NEGALGASAQ GCTGNTTSNG NPGMPADTDF QDQYCSTALG AGAKAGMPGD 121 GSVAFVGTAI GSKSVAEQFG AIAVGGKANA AGYSGVAVGT YAQALGSRSL AFGRQAVSAA 181 YSSVALGYVS YAQSEGAVAI GNSAWAANNR SIAIGGAVER DANGQLVTNW SAAEQTKAGG 241 SQSIAMGVRA RTKSLVVDDP DTVANEADPG GASDAIAIGT DAQANGDRSL AIGRQNQAGN 301 EQSIGIGAGN TATGKLSIGI GSSNVASGEQ SLSLGAGNNA LGQGSISIGT ETTAGGLRSI 361 AFGVRASTKE ANLDIPDDVA AIDAIAIGTN TMANGDRSVS IGTGSQASSG AVSIGDAAKA 421 VGDKSVSIGT ESWADGDESV SIGLVNNAGF EGNDRIKGGQ TSVSLGAFNQ SPGIEAIAIG 481 ARNEANADRS IAIGSRAKTK AADPAQADGG ARDAVAIGTD ALANDDRSIS IGWNSSTSLN 541 DSISIGTRAT SGSAGDIMIG TGSGTGSTSG QNNVALGVAA SQKVKGSSNI AIGDSAGGYR 601 EGDNNVAIGT NAGIQFSESE HETAVRADLV VSDAVSIGNE ALASADEAIA IGTGAVASGL 661 KSISIGVGNT VSGASSGAIG DPTDITGTGS YSLGNDNTIA ADNAGTFGND NTLADAADGS 721 RVIGNGNNID VSDAFVLGNG ADVTEAGGVA LGSGSVSDTG ADVAGYVPGG ASTADQNAIE 781 ATQSTRGAVA VGNPDAETGV YRQITGVAAG TADSDAANVA QLKSVETIAK TGWKLTTDSG 841 SIDGIGPGDE LVLKGGDGNI VISNQILSND VSIDLADEIE VNRVTARDPD TGASTVLDEN 901 GLSFTTQDAN GEDTALGPRV TAAGIQAAGK ITNVAAGEAD TDAVNFSQLR QVETASGNTD 961 QRAVKYDWTD ANTNGVIDEG ELNLDSVTLA GGTGGTRISN LAPGALSAAS TDAVNGSQLF 1021 GLRSRVSNVA VALGGGAAYD PVKDEWIAPK YTIGGTDYSN VGDALAAVGG TAGAGWSLSA 1081 QGANASNVAP GETVDLRNGD GNIVVSKAET GDTVSFDLAD DLDVAESITV GADPADPNAP 1141 TTVITGGSIV IGGTMLGSNG LVITGGPSVT TDGIDAGGMK VTNVANGTVA KDSKDAVNGD 1201 QLFDVVAKAT ANGVGYDDKS KGTLTLEGAD GTKITNVAAG DLNANSTDAV SGSQLYATNV 1261 KVDRLDTEVK EIDSRVTYIE SFQGDLENAA VYDTDAAGKR LNTLTLEGGD PNKPVLIANV 1321 AKGVKATDAV NVGQLDESVA ESKSYTDEKT EWAIDQAAIY TDQVIETKVS AVNNYAQQRF 1381 AQLSGEIGQV RGEARQAAAI GLAAASLRFD NEPGKLSVAL GGGFWRSEGA LAFGAGYTSE 1441 DGRVRANLTG AAAGGNVGVG AGLSITLN //