LOCUS AEG51866.1 2073 aa PRT BCT 08-JUN-2015
DEFINITION Sinorhizobium meliloti AK83 conserved repeat domain protein
protein.
ACCESSION CP002781-91
PROTEIN_ID AEG51866.1
SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83)
ORGANISM Sinorhizobium meliloti AK83
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
REFERENCE 1 (bases 1 to 3820344)
AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A.
TITLE Replicon-dependent bacterial genome evolution: the case of
Sinorhizobium meliloti
JOURNAL Genome Biol Evol 5 (3), 542-558 (2013)
PUBMED 23431003
REFERENCE 2 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3820344)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4086303
Source DNA and organism available from Emanuele G. Biondi
(emanuele.biondi@unifi.it)
Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Sinorhizobium meliloti AK83
collection_date :: Missing
lat_lon :: Missing
depth :: Missing
alt_elev :: Missing
country :: Missing
environment :: Host, Plant root, Root nodule, Soil
num_replicons :: 5
ref_biomaterial :: Missing
biotic_relationship :: Symbiotic
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi05780
Current Finishing Status :: Finished
Funding Program :: DOE-CSP 2009
Source of Isolate :: Biondi, Emanuele (Universita di
Firenze)
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
Gram Staining :: Gram-
Symbiotic Relationship :: Mutualistic
Diseases :: None
Phenotypes :: Nitrogen cycle, Streptomycin resistant,
Symbiotic
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Sinorhizobium meliloti AK83"
/mol_type="genomic DNA"
/strain="AK83"
/db_xref="taxon:693982"
/chromosome="1"
/collected_by="Emmanuele Biondi"
protein /locus_tag="Sinme_0093"
/inference="protein motif:TFAM:TIGR01451"
/note="KEGG: mes:Meso_1515 hypothetical protein; TIGRFAM:
Domain of unknown function DUF11; PFAM: Domain of unknown
function DUF11"
/transl_table=11
/db_xref="InterPro:IPR001434"
BEGIN
1 MRGIRGIVGR VMACLAAFAA LCPAVALAVP APAGALIESQ AVVSYFNTEL GIYESVSTNV
61 VVTRVNSVKA IEVVSDQTVF MAPASVGQFA FFIRNTGNAP LSPSATLEQV AGHHANLVDI
121 RAVIDQNRNG TADPGEWELT PDMAIELPVG GELPVIVQFA TPASSHDGQL AALRLSAKDG
181 SVADAATGTV IMSSTGLVLE KSATENEVQA GGRLRYGLRL RNNGANAVAA YAHLDGSSIL
241 IDGAAASGIL VRDARPLNTR VVNAESAAGF VGLYHVAGQP THTYVTTLPQ DPSAVDAVAF
301 FRAGDYPGGF SANLAFEVAV AGNAQEGFIL NEASTWQQSG EDLVEVRSNL VRTPVEGGEA
361 ALTYAAPDGR PISTAALNSN VRLHLSAAAC NTTPGADSVR IRIATDPEAD LETAVATETG
421 PNTGLFTTAL IPIQRVLPVV QGDSVVSGDR NTKVSASATC GGQTVSAILT VNPGGFVFHS
481 ASNVAIPGAT VILYDASGAE IERIVSDADG FYVVSAAQNA GAYRIDVLPP EGFSFPSERK
541 VFPALGRNVD AEASYGAAFT TTGAFSGIDI PLDPDASSVL RLEKSVDEAN PAPGDILVYS
601 LTLTNTTGIG LVSAAIRDGL PKGISYLEGT ARLDGKPVEV SGFPGRNLTF DLGFVGPDDT
661 VALTYMAAVD PTAQGRLANV ALASGNLAGR GEVVSNEARA LVRIQRDGGV FSDEGVVLGK
721 VYADLNGNGQ QDRYLAAGRN AADGALERVE PGVPGVKLQF SNGASVVTDI DGKYSLPGLP
781 PGSHVIAVST PTLPATVKLR STTARDALSP QSRYLRLLPG QVVSEYFAVS PREGVSRKEV
841 LAELESRRQA YAENIAASKT VSVPERLNPG GEEWVDYFGR LSSSRREAAK TTETQIVARE
901 QSEEESAESG KADAPQALAL DRTRDLEAEI RGLSPALGFL DLEADSLVNS DIVSVRIKGP
961 AEGKLGLNLN GEPVSDGQVG QRVVYASGGV QAAEYVAIRL EGGRNRLEAT FSDPFGNVRE
1021 RNEITVLAPG RPARIEIVAP PAAFADPASA IPVLIRFVDA DGVPTHASMD VTLETSGRGR
1081 WGAEDIRATE PGVQVFVDKG EALVDYYPPA LSGTHKIAVR NGLGRYEAEV KLLADDSKRI
1141 VAGVVEGVVR LPGSVEPATG LEGFDGVTTG VGGELYLQGK IKGDVLLTLR YDSDLDTEER
1201 LFRDIDPERY YPVYGDASER GYDAQSRSRL YVKVEKGLNY VLYGDIDIAP QASEFQLGSQ
1261 NRLLTGAQAH VETGPVTIDL FAGRTDQNQV IREFRAEGLS GPYDLDLSAY AEGSERVEVV
1321 TRDRRQPSRV IDTVLLKRFD DYRLDYFGNS IIFNAPVPAF DDDGNPNFIR VTYEVEGDGD
1381 AYWVYAGEVR YRVNDRIAVG YREMRSEAGS AFDDRRTVRG GYVSADLGPY GKAEVELAQT
1441 VDKDGEAGRA SRFGYEVKKE RVTVRVDAAR ADESFAEGSS LSPGSAEVNV SADWKVNSRL
1501 GIKTSLLYDQ RLTTGNERFG AELLPSWIVN PELTVSGGMR FVRLVPGDGD VPRSVPSAVL
1561 GADWRPAAIP RFGLKGEIEA DLTDFSHLRA LLEGSYQATE RVKVYAGVDW ATSGSEFLDF
1621 SSAGGATGRM RSGVEYRLSD EVKTFTEMRG GSQTGFAGGV AGDWDLGRWD LPGWIGGKDA
1681 RFYASLERFQ PYDLDQIIGL PFGLDDEANS PQTTLSAGYL APLKDGNARL GLGAELSFRD
1741 GGYTAYSQQY WSERAGEWTW AVENRLAKAD TDTQQRLRDH LRVGAALRPE EESLDGLFLG
1801 GVRVDRNFGS DIATDTAYWS AGGSWALDSD TRVTARQAGQ FQAKTAADVT GETFVLLGQA
1861 GIERDFEIQD ELRLRLGFNG TLFYDALNGR SYTGLGAEIG FVPAKNVLVA AGYNVSNVDA
1921 SSVSDIYAAG PYVRLSITLA VLAALTDHDV VTVSGGGTIT LVKRVRNVTS GSGFAVTSAG
1981 GPGDILEYRI TFTNPSADPV SNVSVYDETP AYTSLAVPPG ATVVATPSGM KCTMVVPAGG
2041 GSNGYTGPLQ WKCTGTMPPG ATGRVAFRAK IAD
//