LOCUS AEE86971.1 1965 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana nucleoporin (DUF3414) protein.
ACCESSION CP002687-7175
PROTEIN_ID AEE86971.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /locus_tag="AT4G38760"
/gene_synonym="T9A14.40"
/gene_synonym="T9A14_40"
/inference="Similar to RNA sequence,
EST:INSD:EL985687.1,INSD:ES022272.1,INSD:EG448929.1,
INSD:EG448400.1,INSD:EG448402.1,INSD:EG448401.1"
/note="Protein of unknown function (DUF3414); CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF3414
(InterPro:IPR021827); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G10845.1); Has 113
Blast hits to 108 proteins in 52 species: Archae - 0;
Bacteria - 2; Metazoa - 61; Fungi - 10; Plants - 37;
Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink)."
/db_xref="TAIR:AT4G38760"
/db_xref="Araport:AT4G38760"
intron_pos 37:0 (1/31)
intron_pos 95:0 (2/31)
intron_pos 131:0 (3/31)
intron_pos 154:1 (4/31)
intron_pos 196:0 (5/31)
intron_pos 243:0 (6/31)
intron_pos 295:2 (7/31)
intron_pos 352:0 (8/31)
intron_pos 385:0 (9/31)
intron_pos 411:0 (10/31)
intron_pos 431:0 (11/31)
intron_pos 483:2 (12/31)
intron_pos 551:0 (13/31)
intron_pos 591:0 (14/31)
intron_pos 619:2 (15/31)
intron_pos 654:2 (16/31)
intron_pos 687:2 (17/31)
intron_pos 717:1 (18/31)
intron_pos 767:0 (19/31)
intron_pos 815:0 (20/31)
intron_pos 851:0 (21/31)
intron_pos 888:0 (22/31)
intron_pos 924:0 (23/31)
intron_pos 961:0 (24/31)
intron_pos 1015:2 (25/31)
intron_pos 1173:0 (26/31)
intron_pos 1209:0 (27/31)
intron_pos 1228:2 (28/31)
intron_pos 1356:0 (29/31)
intron_pos 1870:0 (30/31)
intron_pos 1939:1 (31/31)
BEGIN
1 MANPNSVDSS LWWDPFDSLL TDLENASLSD DLPQPIAKKL EENHAWFVGT LSMFKPPSEK
61 SKEALNSDLV KIKEHQLVIK PQLKDKALRI SSHLNLDEIQ SYILVERSME QEYGTTDSVA
121 QELTQEFIDM ILLQYYIQRQ CLLKCTKRIL IHALYAPREE SSIKEEAVKL ISDGLERRQS
181 SVLEDLLSSC FPKNMDVNLF TLWAEETLIE DNLILDILFL IYNESYCSCN GERWRKLCSF
241 YKGILSGSYN FSKLAVSVEA QHSACRVQIQ LLMILIETLD MENLLQMVHD GVPFRSGTCV
301 FSIVDVQEMD ATISSLNTSE VNEAGPLVLA WAVFLCLISS LPGKEESPFL MDIDHVSYVH
361 QAFEAASLSY FLEILQSNLL NDFDGPISGH RSVVRTFISA FIASYEINLQ LEDGTLELIL
421 DILSKVYQGE ESLCCQFWDR KSFVDGPIRC LLFDLESEFP FRSAEFIRLL SSLSEGSWPA
481 ECVYNFLDKS VGVSTLFDIT SDSPADDASQ LVETSRPLHI PGLEGLVIPS NTRGRILRVI
541 SENTVLVRWE YSLSGIIVLI IRLANKLYIG NNREAFVTLE LLRRMVTFNK AVCFSLLNIS
601 HFFYVQESYV NGKMESDVRV VDIICNSVRS LTFDSGGAAV MAMAIDILAK LLRCSPSSVA
661 PMVLKSNIFD MTSCSDVPDS GYNISLSGSW SLSGKLAKMI LIDCEKNDTS CPLVISVLEF
721 TMQLVEGGLE NDVVFALVVF SLQYILASHE YWKYNHGNMR WKVTLKVIEL MKTCLRFSKF
781 STKLRDVLLD ILLNDASVHS ALFRIICTTT QNLENLCSSR FIEPAEIEGW QLAIVSVLDV
841 LNVILSQFSE STHSGLPVFH QAMLSSTTKP ISVVAAITSL ISYFRNPTIQ VCAAQVLSKL
901 FALAESSQLY IISNAGFGLD NKQITDLRNS VTQIVLDLSG QNEHLVVATL KLLTVAARFQ
961 PALLVAIFDS DEDSDSSNVK QSRKDASSIP DWACKSRLLH TILQYVERAT DFVDRHTDIL
1021 LGLLDFLKTL WQEAGQYANM LEPFKASKKL WQEFSDIISQ ASKIKDSTVG SLGKEEISKL
1081 LVKYQCQASV LEIMACNMFL YKKLLFAESL KKPCVETKKT ASNGVSPPKL TWTADSDPKD
1141 IFSKWCDISV LDGIIQSVSS LDGESEINFQ AKVAAVLLIV HLIVKLETSG AGALSMVLVE
1201 KIKLISETLC AQPAFSELLA QYSKLGYSGG KELMPMIFSD LYCHLQGKLE GRDIPTGPFK
1261 ELFQFLVETS FWEKYKQKTN KDVNMALGDC LFDTQQIQTE LGIDIWDFSE WKTSKTTAEE
1321 MLNYMQRANS MVLLSTSQLS VLHALISVLI LYEDNSLEES AAAERKIPSR VTLLSIDKVC
1381 RKFCTTVDSL ASLWDAPKIV FDILTAQADL LSRLLKSAKK NLSLSVCALV LRNVGPGLKI
1441 LGSLRHSNAI LKKTINLLLE VLLLVVGFGS DNSNSSGMGH MVLAKDFAEI SDATIGLLPL
1501 LCNFMGNPEY LTLCLTTVDL ILRNFLTPET WFPIIQSQLR LQHVILQLQD KKSTTSVSAI
1561 LKFFLTIAQV HGGAQMLLNS GFFSTLRALL MEFPDGMSTL VSDNEKGSLL EKTEKTQHIW
1621 GIGLAVVTAM VHSLGSVSAG ADIVESVISY FFLEKGYMIS YYLAAPDFPS DDRDKVRLRS
1681 QRTWTSLAYL RVTEHTLLLL CALASHWRSW VKIMKDMDSP LREMTIHLLA FISKGAQRLR
1741 ESQSHISHLL CPPVAKEEFD SCKRPSFINT KHGWFSLAPL VCVGKPKITA VSISTALVVR
1801 GDTTEHPGSV PQSQFSDSVA IQIYRVASLL LKFLCLQAEG VVTRAEEVGY VDIAHFPELP
1861 EPEILHGLQD QATAIVAELC DNYKSKEIPD EVKKLCLMLI QTTEMSLYLE LCVVQVCRIH
1921 PVFGRVDNFS KDLKKLVKAA EVHTYLEPSI DSLKKIAAFL YPGSL
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