LOCUS AEE86916.1 1273 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Patched family protein protein.
ACCESSION CP002687-7103
PROTEIN_ID AEE86916.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /locus_tag="AT4G38350"
/gene_synonym="F22I13.120"
/gene_synonym="F22I13_120"
/inference="Similar to RNA sequence,
EST:INSD:BX836139.1,INSD:EL021892.1,INSD:ES145805.1,
INSD:ES143945.1,INSD:BX840185.1,INSD:EH951016.1,
INSD:EL981501.1,INSD:ES089925.1,INSD:ES151218.1,
INSD:EL004896.1,INSD:ES068982.1,INSD:EH919057.1,
INSD:ES079772.1,INSD:EL077687.1,INSD:EH943858.1,
INSD:EH991814.1,INSD:ES165052.1,INSD:ES199199.1"
/note="Patched family protein; FUNCTIONS IN: hedgehog
receptor activity; LOCATED IN: plasma membrane, vacuole,
membrane; EXPRESSED IN: 26 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Niemann-Pick C type protein (InterPro:IPR004765), Patched
(InterPro:IPR003392), Sterol-sensing 5TM box
(InterPro:IPR000731); BEST Arabidopsis thaliana protein
match is: Patched family protein (TAIR:AT1G42470.1); Has
3325 Blast hits to 2735 proteins in 472 species: Archae -
80; Bacteria - 454; Metazoa - 1756; Fungi - 181; Plants -
170; Viruses - 0; Other Eukaryotes - 684 (source: NCBI
BLink)."
/db_xref="TAIR:AT4G38350"
/db_xref="Araport:AT4G38350"
intron_pos 12:0 (1/38)
intron_pos 29:2 (2/38)
intron_pos 64:0 (3/38)
intron_pos 100:0 (4/38)
intron_pos 139:0 (5/38)
intron_pos 189:1 (6/38)
intron_pos 272:0 (7/38)
intron_pos 334:0 (8/38)
intron_pos 352:2 (9/38)
intron_pos 392:0 (10/38)
intron_pos 420:0 (11/38)
intron_pos 452:0 (12/38)
intron_pos 486:0 (13/38)
intron_pos 509:0 (14/38)
intron_pos 541:0 (15/38)
intron_pos 577:0 (16/38)
intron_pos 615:0 (17/38)
intron_pos 643:0 (18/38)
intron_pos 686:0 (19/38)
intron_pos 752:1 (20/38)
intron_pos 800:1 (21/38)
intron_pos 813:0 (22/38)
intron_pos 841:0 (23/38)
intron_pos 864:0 (24/38)
intron_pos 889:2 (25/38)
intron_pos 913:0 (26/38)
intron_pos 963:0 (27/38)
intron_pos 985:0 (28/38)
intron_pos 1033:1 (29/38)
intron_pos 1055:0 (30/38)
intron_pos 1077:0 (31/38)
intron_pos 1108:1 (32/38)
intron_pos 1120:2 (33/38)
intron_pos 1140:0 (34/38)
intron_pos 1177:0 (35/38)
intron_pos 1199:2 (36/38)
intron_pos 1222:0 (37/38)
intron_pos 1245:0 (38/38)
BEGIN
1 MAIPTKLLLL QLFTFSLLLT ANLTHSEPSN NRHSKEYCAM YDICGHRSDG KVLNCPYASP
61 SIQPDELFSA KIQSLCPTIS GNVCCTETQF DTLRSQVQQA VPFLVGCPAC LRNFLNLFCE
121 LSCSPNQSLF INVTSVAEVS GNLTVDGIDY HITDTFGEGL YESCKEVKFG TMNTRAINFV
181 GGGAKNFREW FTFIGQKAPS GFPGSPYAIN FKSSIPESSA MVPMNVSVYS CGDTSLGCSC
241 GDCPSSPACS SPEPLPPHDE DSCSIRIGPL KVRCIELSMA LVYVLLVSCF FGWAGLNRRR
301 NTTQPLDSSK PLLHPVEEDG INSEMKENIL GVKVQRHAQL SPVQRYMAKF YRSYGSWIAR
361 NPSLVLFMSV AIVLALCSGL YNFKVETRPE KLWVGPESKA AEEKKFFDTH LSPFYRIEQL
421 ILATVPDPKS GRAPSIVTDE NILLLFDIQQ KVDQIRGNYS GSEVSLPDIC LKPLGEDCAT
481 QSILQYFKMD SGTFDDYGGV EHAEYCFQHY TSSETCLSAF QAPVDPSAVL GGFSGNNYSE
541 ATAFVVTYPV NNVIGDSSNE NARAVAWEKS FIQLAKEELL PMVRSKNLSL SFSSESSIEE
601 ELKRESTADV ITIAASYLVM FVYISVTLGD APQFYTFYIS SKVLLGLSGV VLVLLSVLGS
661 VGVFSALGVK STLIIMEVIP FLVLAVGVDN MCILVHAVKR QPREVSLEQR ISSALVEVGP
721 SITLASLSEV LAFAVGAFVP MPACRIFSMF AALAIMLDFF LQITAFVALI VFDCKRSADN
781 RIDCFPCIKV PSSSRESVEG GREPGFLERY MKEVHAPVLG LWGVKMVVVA VFFAFALASI
841 AISPRLETGL EQKIVLPRDS YLQDYFDSLS EYLRVGPPLY FVVKNYNYSS ESRHTNQLCS
901 ISQCNSNSLL NEISRASQAS DTSYIAKPAA SWLDDFLVWL SPEAFGCCRK FTNGSYCPPD
961 DQPPCCTAEE DICSLDGICK DCTTCFRHSD LVQDRPSTAQ FREKLPWFLN ALPSADCAKG
1021 GHGAYTNSVD LKGYESGVIQ ASEFRTYHTP LNTQGDYVNA LRAAREFSSR ISNSLKIDIF
1081 PYSVFYIFFE QYLNIWTVAL TNLAIAIGAI FIVCWLITSS AWSSAIIVLV LVMILVDLMG
1141 MMVILGIQLN AVSVVNLIMS IGIAVEFCVH ISHAFLMSSG DREHRAREAL ETMGASVFSG
1201 ITLTKLVGVI VLCFARSEIF VVYYFQMYLA LVIIGFLHGL VFLPVILSLA GPPQLNLDIE
1261 QQQTDEASSS LLN
//