LOCUS AEE86881.1 501 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana histone deacetylase 1 protein.
ACCESSION CP002687-7058
PROTEIN_ID AEE86881.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="HD1"
/locus_tag="AT4G38130"
/gene_synonym="ARABIDOPSIS HISTONE DEACETYLASE 1"
/gene_synonym="ARABIDOPSIS HISTONE DEACETYLASE 19"
/gene_synonym="ATHD1"
/gene_synonym="ATHDA19"
/gene_synonym="ATRPD3A"
/gene_synonym="F20D10.250"
/gene_synonym="F20D10_250"
/gene_synonym="HDA1"
/gene_synonym="HDA19"
/gene_synonym="HISTONE DEACETYLASE"
/gene_synonym="histone deacetylase 1"
/gene_synonym="HISTONE DEACETYLASE 19"
/gene_synonym="HISTONE DEACETYLASE19"
/gene_synonym="RPD3A"
/inference="Similar to RNA sequence,
EST:INSD:EL174948.1,INSD:BP600849.1,INSD:ES002574.1,
INSD:AV828557.1,INSD:ES078873.1,INSD:BP665391.1,
INSD:ES040130.1,INSD:ES063615.1,INSD:ES170331.1,
INSD:EL149370.1,INSD:CK119763.1,INSD:BP599708.1,
INSD:EL207352.1,INSD:BP602556.1,INSD:ES053999.1,
INSD:F15302.1,INSD:ES016860.1,INSD:BP797633.1,
INSD:BP670923.1,INSD:BP807451.1,INSD:EG510922.1,
INSD:R90034.1,INSD:EG422709.1,INSD:EG510921.1,
INSD:AV784472.1,INSD:EG510920.1,INSD:BP866805.1,
INSD:BP654085.1,INSD:ES055974.1,INSD:ES126821.1,
INSD:ES005228.1,INSD:ES158639.1,INSD:ES193855.1,
INSD:BP606102.1,INSD:EL264726.1,INSD:EH836057.1,
INSD:BP812951.1,INSD:BP806071.2,INSD:EH946346.1,
INSD:W43397.1,INSD:BP845756.1,INSD:ES049608.1,
INSD:BP655286.1,INSD:ES210011.1,INSD:BP840137.1,
INSD:BP644086.1,INSD:EL979505.1,INSD:BP632022.1,
INSD:AV797698.1,INSD:AV801777.1,INSD:BP654971.1,
INSD:BP847190.1,INSD:BP613192.1,INSD:EH965037.1,
INSD:BP807969.1,INSD:EL076295.1,INSD:EL967169.1,
INSD:EG422697.1,INSD:ES111968.1,INSD:AV800097.1,
INSD:EG425320.1,INSD:ES062929.1,INSD:EL244625.1,
INSD:EL209372.1,INSD:BP592606.1,INSD:ES114390.1,
INSD:AV823493.1,INSD:EH957673.1,INSD:EL338323.1,
INSD:AV536771.1,INSD:AV797231.1,INSD:ES154181.1,
INSD:EH835641.1,INSD:EL207050.1,INSD:EL180676.1,
INSD:AV808332.1,INSD:DR232894.1,INSD:BP600898.1,
INSD:AV806075.1,INSD:ES105710.1,INSD:AV813963.1,
INSD:BP648461.1,INSD:AV550363.1,INSD:ES204697.1,
INSD:BP840219.1,INSD:EG523134.1,INSD:ES055780.1,
INSD:CF653077.1,INSD:ES049428.1,INSD:BP809989.1,
INSD:EH871031.1,INSD:BP833538.1,INSD:ES108110.1,
INSD:EL061798.1,INSD:ES080464.1,INSD:EL152789.1,
INSD:ES214064.1,INSD:BP614575.1,INSD:ES012499.1,
INSD:BP805696.1,INSD:ES115260.1,INSD:EG510923.1,
INSD:ES167970.1,INSD:AV810803.1,INSD:AV818028.1,
INSD:EL002438.1,INSD:EL052317.1,INSD:CF652020.1,
INSD:EH961903.1,INSD:ES025432.1,INSD:ES085625.1,
INSD:CB257817.1,INSD:ES022658.1,INSD:BP648974.1,
INSD:BX839411.1,INSD:ES005699.1,INSD:ES033992.1,
INSD:AA605428.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AK226389.1,INSD:BX827416.1,INSD:BX827687.1,
INSD:AF014824.1,INSD:BT008873.1,INSD:AY093153.1,
INSD:AF195547.1"
/note="histone deacetylase 1 (HD1); CONTAINS InterPro
DOMAIN/s: Histone deacetylase (InterPro:IPR003084),
Histone deacetylase superfamily (InterPro:IPR000286); BEST
Arabidopsis thaliana protein match is: histone deacetylase
6 (TAIR:AT5G63110.1); Has 8765 Blast hits to 8554 proteins
in 1452 species: Archae - 219; Bacteria - 3185; Metazoa -
1529; Fungi - 558; Plants - 480; Viruses - 0; Other
Eukaryotes - 2794 (source: NCBI BLink)."
/db_xref="TAIR:AT4G38130"
/db_xref="Araport:AT4G38130"
intron_pos 177:0 (1/6)
intron_pos 324:0 (2/6)
intron_pos 401:0 (3/6)
intron_pos 424:2 (4/6)
intron_pos 444:0 (5/6)
intron_pos 468:0 (6/6)
BEGIN
1 MDTGGNSLAS GPDGVKRKVC YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ
61 VLKPFPARDR DLCRFHADDY VSFLRSITPE TQQDQIRQLK RFNVGEDCPV FDGLYSFCQT
121 YAGGSVGGSV KLNHGLCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY
181 VDIDIHHGDG VEEAFYATDR VMTVSFHKFG DYFPGTGHIQ DIGYGSGKYY SLNVPLDDGI
241 DDESYHLLFK PIMGKVMEIF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKFMRSFN
301 VPLLLLGGGG YTIRNVARCW CYETGVALGV EVEDKMPEHE YYEYFGPDYT LHVAPSNMEN
361 KNSRQMLEEI RNDLLHNLSK LQHAPSVPFQ ERPPDTETPE VDEDQEDGDK RWDPDSDMDV
421 DDDRKPIPSR VKREAVEPDT KDKDGLKGIM ERGKGCEVEV DESGSTKVTG VNPVGVEEAS
481 VKMEEEGTNK GGAEQAFPPK T
//