LOCUS AEE86881.1 501 aa PRT PLN 23-MAR-2023 DEFINITION Arabidopsis thaliana histone deacetylase 1 protein. ACCESSION CP002687-7058 PROTEIN_ID AEE86881.1 SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 18585056) AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G., Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N., Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M., Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R., Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M., Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M., Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W., Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L., Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J., Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I., Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U., Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M., Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C., Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J., Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S., Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A., Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D., Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S., Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O., Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S., Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F., Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T., Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A., Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D., Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P., Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W., Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M., Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E., Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M., Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G., Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A., Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N., Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M., Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S., Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K., Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C., Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D., Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A., Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N., Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M., Martienssen,R. and McCombie,W.R. TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 769-777 (1999) PUBMED 10617198 REFERENCE 2 (bases 1 to 18585056) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA REFERENCE 3 (bases 1 to 18585056) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter FEATURES Qualifiers source /organism="Arabidopsis thaliana" /mol_type="genomic DNA" /db_xref="taxon:3702" /chromosome="4" /ecotype="Columbia" protein /gene="HD1" /locus_tag="AT4G38130" /gene_synonym="ARABIDOPSIS HISTONE DEACETYLASE 1" /gene_synonym="ARABIDOPSIS HISTONE DEACETYLASE 19" /gene_synonym="ATHD1" /gene_synonym="ATHDA19" /gene_synonym="ATRPD3A" /gene_synonym="F20D10.250" /gene_synonym="F20D10_250" /gene_synonym="HDA1" /gene_synonym="HDA19" /gene_synonym="HISTONE DEACETYLASE" /gene_synonym="histone deacetylase 1" /gene_synonym="HISTONE DEACETYLASE 19" /gene_synonym="HISTONE DEACETYLASE19" /gene_synonym="RPD3A" /inference="Similar to RNA sequence, EST:INSD:EL174948.1,INSD:BP600849.1,INSD:ES002574.1, INSD:AV828557.1,INSD:ES078873.1,INSD:BP665391.1, INSD:ES040130.1,INSD:ES063615.1,INSD:ES170331.1, INSD:EL149370.1,INSD:CK119763.1,INSD:BP599708.1, INSD:EL207352.1,INSD:BP602556.1,INSD:ES053999.1, INSD:F15302.1,INSD:ES016860.1,INSD:BP797633.1, INSD:BP670923.1,INSD:BP807451.1,INSD:EG510922.1, INSD:R90034.1,INSD:EG422709.1,INSD:EG510921.1, INSD:AV784472.1,INSD:EG510920.1,INSD:BP866805.1, INSD:BP654085.1,INSD:ES055974.1,INSD:ES126821.1, INSD:ES005228.1,INSD:ES158639.1,INSD:ES193855.1, INSD:BP606102.1,INSD:EL264726.1,INSD:EH836057.1, INSD:BP812951.1,INSD:BP806071.2,INSD:EH946346.1, INSD:W43397.1,INSD:BP845756.1,INSD:ES049608.1, INSD:BP655286.1,INSD:ES210011.1,INSD:BP840137.1, INSD:BP644086.1,INSD:EL979505.1,INSD:BP632022.1, INSD:AV797698.1,INSD:AV801777.1,INSD:BP654971.1, INSD:BP847190.1,INSD:BP613192.1,INSD:EH965037.1, INSD:BP807969.1,INSD:EL076295.1,INSD:EL967169.1, INSD:EG422697.1,INSD:ES111968.1,INSD:AV800097.1, INSD:EG425320.1,INSD:ES062929.1,INSD:EL244625.1, INSD:EL209372.1,INSD:BP592606.1,INSD:ES114390.1, INSD:AV823493.1,INSD:EH957673.1,INSD:EL338323.1, INSD:AV536771.1,INSD:AV797231.1,INSD:ES154181.1, INSD:EH835641.1,INSD:EL207050.1,INSD:EL180676.1, INSD:AV808332.1,INSD:DR232894.1,INSD:BP600898.1, INSD:AV806075.1,INSD:ES105710.1,INSD:AV813963.1, INSD:BP648461.1,INSD:AV550363.1,INSD:ES204697.1, INSD:BP840219.1,INSD:EG523134.1,INSD:ES055780.1, INSD:CF653077.1,INSD:ES049428.1,INSD:BP809989.1, INSD:EH871031.1,INSD:BP833538.1,INSD:ES108110.1, INSD:EL061798.1,INSD:ES080464.1,INSD:EL152789.1, INSD:ES214064.1,INSD:BP614575.1,INSD:ES012499.1, INSD:BP805696.1,INSD:ES115260.1,INSD:EG510923.1, INSD:ES167970.1,INSD:AV810803.1,INSD:AV818028.1, INSD:EL002438.1,INSD:EL052317.1,INSD:CF652020.1, INSD:EH961903.1,INSD:ES025432.1,INSD:ES085625.1, INSD:CB257817.1,INSD:ES022658.1,INSD:BP648974.1, INSD:BX839411.1,INSD:ES005699.1,INSD:ES033992.1, INSD:AA605428.1" /inference="Similar to RNA sequence, mRNA:INSD:AK226389.1,INSD:BX827416.1,INSD:BX827687.1, INSD:AF014824.1,INSD:BT008873.1,INSD:AY093153.1, INSD:AF195547.1" /note="histone deacetylase 1 (HD1); CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 6 (TAIR:AT5G63110.1); Has 8765 Blast hits to 8554 proteins in 1452 species: Archae - 219; Bacteria - 3185; Metazoa - 1529; Fungi - 558; Plants - 480; Viruses - 0; Other Eukaryotes - 2794 (source: NCBI BLink)." /db_xref="TAIR:AT4G38130" /db_xref="Araport:AT4G38130" intron_pos 177:0 (1/6) intron_pos 324:0 (2/6) intron_pos 401:0 (3/6) intron_pos 424:2 (4/6) intron_pos 444:0 (5/6) intron_pos 468:0 (6/6) BEGIN 1 MDTGGNSLAS GPDGVKRKVC YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ 61 VLKPFPARDR DLCRFHADDY VSFLRSITPE TQQDQIRQLK RFNVGEDCPV FDGLYSFCQT 121 YAGGSVGGSV KLNHGLCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY 181 VDIDIHHGDG VEEAFYATDR VMTVSFHKFG DYFPGTGHIQ DIGYGSGKYY SLNVPLDDGI 241 DDESYHLLFK PIMGKVMEIF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKFMRSFN 301 VPLLLLGGGG YTIRNVARCW CYETGVALGV EVEDKMPEHE YYEYFGPDYT LHVAPSNMEN 361 KNSRQMLEEI RNDLLHNLSK LQHAPSVPFQ ERPPDTETPE VDEDQEDGDK RWDPDSDMDV 421 DDDRKPIPSR VKREAVEPDT KDKDGLKGIM ERGKGCEVEV DESGSTKVTG VNPVGVEEAS 481 VKMEEEGTNK GGAEQAFPPK T //