LOCUS AEE86688.1 565 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana U2 snRNP auxilliary factor, large
subunit, splicing factor protein.
ACCESSION CP002687-6806
PROTEIN_ID AEE86688.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="ATU2AF65A"
/locus_tag="AT4G36690"
/gene_synonym="AP22.29"
/gene_synonym="AP22_29"
/inference="Similar to RNA sequence,
EST:INSD:DR361116.1,INSD:ES091161.1,INSD:ES195814.1,
INSD:BP785805.1,INSD:ES064858.1,INSD:EL204513.1,
INSD:ES131821.1,INSD:EH871514.1,INSD:DR184888.1,
INSD:BP650129.1,INSD:BE529461.1,INSD:EL978907.1,
INSD:ES127005.1,INSD:EG457337.1,INSD:ES060127.1,
INSD:BE526961.1,INSD:AV794431.1,INSD:CB255280.1,
INSD:DR361106.1,INSD:BP796140.1,INSD:EG457585.1,
INSD:DR361113.1,INSD:EG438685.1,INSD:N96534.1,
INSD:BP581781.1,INSD:BP618609.1,INSD:BE523781.1,
INSD:BP620964.1,INSD:EG457597.1,INSD:EG461773.1,
INSD:BP819302.1,INSD:ES069892.1,INSD:ES135090.1,
INSD:ES105953.1,INSD:BP603233.1,INSD:EL030289.1,
INSD:BP601293.1,INSD:DR361107.1,INSD:N96578.1,
INSD:BP600760.1,INSD:EH804247.1,INSD:EL978366.1,
INSD:BP864461.1,INSD:ES100189.1,INSD:AV530328.1,
INSD:BE523180.1,INSD:BP831051.1,INSD:BP616793.1,
INSD:EH969881.1,INSD:DR361114.1,INSD:BP601547.1,
INSD:DR361108.1,INSD:BE526152.1,INSD:BP868700.1,
INSD:BE523640.1,INSD:BE525657.1,INSD:EH950727.1,
INSD:BP561342.2,INSD:EH942012.1,INSD:T45178.1,
INSD:CB259183.1,INSD:EL311768.1,INSD:EG438683.1,
INSD:ES062911.1,INSD:BP854791.1,INSD:DR361110.1,
INSD:BP789297.1,INSD:BP608230.1,INSD:EG457336.1,
INSD:DR361115.1,INSD:ES017804.1,INSD:DR184884.1,
INSD:ES036244.1,INSD:EL245374.1,INSD:DR361109.1,
INSD:ES024150.1,INSD:EG479917.1,INSD:ES142110.1,
INSD:BP806886.1,INSD:BP569791.1,INSD:BP616265.1,
INSD:EG479926.1,INSD:ES048576.1,INSD:BP832301.1,
INSD:EH846834.1,INSD:DR184889.1,INSD:ES114978.1,
INSD:BP790959.1,INSD:AA720298.1,INSD:ES106616.1,
INSD:DR184883.1,INSD:ES194376.1,INSD:AV829600.1,
INSD:DR361112.1,INSD:BE528084.1,INSD:DR361111.1,
INSD:ES001062.1,INSD:DR184885.1,INSD:BE529831.1,
INSD:EL010139.1,INSD:BP612616.1,INSD:BE526242.1"
/inference="Similar to RNA sequence, mRNA:INSD:BX827587.1"
/note="ATU2AF65A; FUNCTIONS IN: RNA binding, nucleotide
binding, nucleic acid binding; INVOLVED IN: nuclear mRNA
splicing, via spliceosome, defense response to bacterium;
LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: RNA recognition motif, RNP-1
(InterPro:IPR000504), Nucleotide-binding, alpha-beta plait
(InterPro:IPR012677), U2 snRNP auxilliary factor, large
subunit, splicing factor (InterPro:IPR006529); BEST
Arabidopsis thaliana protein match is: U2 snRNP auxilliary
factor, large subunit, splicing factor (TAIR:AT1G60900.1);
Has 35333 Blast hits to 34131 proteins in 2444 species:
Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi -
991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610
(source: NCBI BLink)."
/db_xref="TAIR:AT4G36690"
/db_xref="Araport:AT4G36690"
intron_pos 39:0 (1/11)
intron_pos 134:2 (2/11)
intron_pos 167:2 (3/11)
intron_pos 192:1 (4/11)
intron_pos 218:0 (5/11)
intron_pos 234:0 (6/11)
intron_pos 254:0 (7/11)
intron_pos 274:1 (8/11)
intron_pos 312:0 (9/11)
intron_pos 461:0 (10/11)
intron_pos 506:1 (11/11)
BEGIN
1 MSEFEDHEGN GTVADAIYDE ENGGRDGEIE DQLDSKPKRE SRDHERETSR SKDREREKGR
61 DKDRERDSEV SRRSRDRDGE KSKERSRDKD RDHRERHHRS SRHRDHSRER GERRERGGRD
121 DDDYRRSRDR DHDRRRDDRG GRRSRRSRSR SKDRSERRTR SRSPSKSKQR VSGFDMAPPA
181 SAMLAAGAAV TGQVPPAPPT LPGAGMFPNM FPLPTGQSFG GLSMMPIQAM TQQATRHARR
241 VYVGGLSPTA NEQSVATFFS QVMAAVGGNT AGPGDAVVNV YINHEKKFAF VEMRSVEEAS
301 NAMSLDGIIF EGAPVKVRRP SDYNPSLAAT LGPSQPSPHL NLAAVGLTPG ASGGLEGPDR
361 IFVGGLPYYF TESQVRELLE SFGGLKGFDL VKDRETGNSK GYAFCVYQDL SVTDIACAAL
421 NGIKMGDKTL TVRRANQGTM LQKPEQENVL LHAQQQIAFQ RVMLQPGAVA TTVVCLTQVV
481 TEDELRDDEE YGDIMEDMRQ EGGKFAFCYK ESALTYTDRR LHKPPNLFIT NGHYFLKEKT
541 DLFLSVFSCL VFEMFCSLTL KMQVL
//