LOCUS AEE86688.1 565 aa PRT PLN 23-MAR-2023 DEFINITION Arabidopsis thaliana U2 snRNP auxilliary factor, large subunit, splicing factor protein. ACCESSION CP002687-6806 PROTEIN_ID AEE86688.1 SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 18585056) AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G., Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N., Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M., Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R., Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M., Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M., Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W., Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L., Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J., Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I., Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U., Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M., Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C., Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J., Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S., Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A., Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D., Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S., Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O., Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S., Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F., Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T., Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A., Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D., Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P., Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W., Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M., Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E., Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M., Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G., Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A., Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N., Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M., Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S., Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K., Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C., Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D., Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A., Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N., Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M., Martienssen,R. and McCombie,W.R. TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 769-777 (1999) PUBMED 10617198 REFERENCE 2 (bases 1 to 18585056) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA REFERENCE 3 (bases 1 to 18585056) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter FEATURES Qualifiers source /organism="Arabidopsis thaliana" /mol_type="genomic DNA" /db_xref="taxon:3702" /chromosome="4" /ecotype="Columbia" protein /gene="ATU2AF65A" /locus_tag="AT4G36690" /gene_synonym="AP22.29" /gene_synonym="AP22_29" /inference="Similar to RNA sequence, EST:INSD:DR361116.1,INSD:ES091161.1,INSD:ES195814.1, INSD:BP785805.1,INSD:ES064858.1,INSD:EL204513.1, INSD:ES131821.1,INSD:EH871514.1,INSD:DR184888.1, INSD:BP650129.1,INSD:BE529461.1,INSD:EL978907.1, INSD:ES127005.1,INSD:EG457337.1,INSD:ES060127.1, INSD:BE526961.1,INSD:AV794431.1,INSD:CB255280.1, INSD:DR361106.1,INSD:BP796140.1,INSD:EG457585.1, INSD:DR361113.1,INSD:EG438685.1,INSD:N96534.1, INSD:BP581781.1,INSD:BP618609.1,INSD:BE523781.1, INSD:BP620964.1,INSD:EG457597.1,INSD:EG461773.1, INSD:BP819302.1,INSD:ES069892.1,INSD:ES135090.1, INSD:ES105953.1,INSD:BP603233.1,INSD:EL030289.1, INSD:BP601293.1,INSD:DR361107.1,INSD:N96578.1, INSD:BP600760.1,INSD:EH804247.1,INSD:EL978366.1, INSD:BP864461.1,INSD:ES100189.1,INSD:AV530328.1, INSD:BE523180.1,INSD:BP831051.1,INSD:BP616793.1, INSD:EH969881.1,INSD:DR361114.1,INSD:BP601547.1, INSD:DR361108.1,INSD:BE526152.1,INSD:BP868700.1, INSD:BE523640.1,INSD:BE525657.1,INSD:EH950727.1, INSD:BP561342.2,INSD:EH942012.1,INSD:T45178.1, INSD:CB259183.1,INSD:EL311768.1,INSD:EG438683.1, INSD:ES062911.1,INSD:BP854791.1,INSD:DR361110.1, INSD:BP789297.1,INSD:BP608230.1,INSD:EG457336.1, INSD:DR361115.1,INSD:ES017804.1,INSD:DR184884.1, INSD:ES036244.1,INSD:EL245374.1,INSD:DR361109.1, INSD:ES024150.1,INSD:EG479917.1,INSD:ES142110.1, INSD:BP806886.1,INSD:BP569791.1,INSD:BP616265.1, INSD:EG479926.1,INSD:ES048576.1,INSD:BP832301.1, INSD:EH846834.1,INSD:DR184889.1,INSD:ES114978.1, INSD:BP790959.1,INSD:AA720298.1,INSD:ES106616.1, INSD:DR184883.1,INSD:ES194376.1,INSD:AV829600.1, INSD:DR361112.1,INSD:BE528084.1,INSD:DR361111.1, INSD:ES001062.1,INSD:DR184885.1,INSD:BE529831.1, INSD:EL010139.1,INSD:BP612616.1,INSD:BE526242.1" /inference="Similar to RNA sequence, mRNA:INSD:BX827587.1" /note="ATU2AF65A; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, defense response to bacterium; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), U2 snRNP auxilliary factor, large subunit, splicing factor (InterPro:IPR006529); BEST Arabidopsis thaliana protein match is: U2 snRNP auxilliary factor, large subunit, splicing factor (TAIR:AT1G60900.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink)." /db_xref="TAIR:AT4G36690" /db_xref="Araport:AT4G36690" intron_pos 39:0 (1/11) intron_pos 134:2 (2/11) intron_pos 167:2 (3/11) intron_pos 192:1 (4/11) intron_pos 218:0 (5/11) intron_pos 234:0 (6/11) intron_pos 254:0 (7/11) intron_pos 274:1 (8/11) intron_pos 312:0 (9/11) intron_pos 461:0 (10/11) intron_pos 506:1 (11/11) BEGIN 1 MSEFEDHEGN GTVADAIYDE ENGGRDGEIE DQLDSKPKRE SRDHERETSR SKDREREKGR 61 DKDRERDSEV SRRSRDRDGE KSKERSRDKD RDHRERHHRS SRHRDHSRER GERRERGGRD 121 DDDYRRSRDR DHDRRRDDRG GRRSRRSRSR SKDRSERRTR SRSPSKSKQR VSGFDMAPPA 181 SAMLAAGAAV TGQVPPAPPT LPGAGMFPNM FPLPTGQSFG GLSMMPIQAM TQQATRHARR 241 VYVGGLSPTA NEQSVATFFS QVMAAVGGNT AGPGDAVVNV YINHEKKFAF VEMRSVEEAS 301 NAMSLDGIIF EGAPVKVRRP SDYNPSLAAT LGPSQPSPHL NLAAVGLTPG ASGGLEGPDR 361 IFVGGLPYYF TESQVRELLE SFGGLKGFDL VKDRETGNSK GYAFCVYQDL SVTDIACAAL 421 NGIKMGDKTL TVRRANQGTM LQKPEQENVL LHAQQQIAFQ RVMLQPGAVA TTVVCLTQVV 481 TEDELRDDEE YGDIMEDMRQ EGGKFAFCYK ESALTYTDRR LHKPPNLFIT NGHYFLKEKT 541 DLFLSVFSCL VFEMFCSLTL KMQVL //