LOCUS AEE86585.1 523 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana winged-helix DNA-binding transcription
factor family protein protein.
ACCESSION CP002687-6668
PROTEIN_ID AEE86585.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="LARP1c"
/locus_tag="AT4G35890"
/gene_synonym="AtLARP1c"
/gene_synonym="La related protein 1c"
/gene_synonym="T19K4.20"
/inference="Similar to RNA sequence,
EST:INSD:AV815758.1,INSD:AV805690.1,INSD:AV803653.1,
INSD:AV809321.1,INSD:BP661506.1,INSD:BP606362.1,
INSD:DR383724.1,INSD:ES078252.1,INSD:EH851331.1,
INSD:EL118078.1,INSD:DR364771.1,INSD:EL270283.1,
INSD:EL317648.1,INSD:BP789033.1,INSD:BP777376.1,
INSD:EL322305.1,INSD:AV560172.1,INSD:DR364776.1,
INSD:EH961491.1,INSD:ES201261.1,INSD:BE523947.1,
INSD:EG528973.1,INSD:EH956567.1,INSD:EG480916.1,
INSD:AV827411.1,INSD:AV802805.1,INSD:BP822483.1,
INSD:DR364778.1,INSD:EG480915.1,INSD:AV552917.1,
INSD:AV803877.1,INSD:AV831271.1,INSD:ES041800.1,
INSD:EL117457.1,INSD:BP567427.1,INSD:Z26699.1,
INSD:BP804859.1,INSD:EL228984.1,INSD:AV546949.1,
INSD:DR364779.1,INSD:CB255507.1,INSD:EL152013.1,
INSD:EL095795.1,INSD:ES101727.1,INSD:AV807901.1,
INSD:EL215738.1,INSD:EL093588.1,INSD:CD532405.1,
INSD:EH940868.1,INSD:EL993564.1,INSD:EL053163.1,
INSD:EL088381.1,INSD:BX837288.1,INSD:AV548619.1,
INSD:BP561439.2,INSD:CB253541.1,INSD:EL152826.1,
INSD:AV553466.1,INSD:EH972994.1,INSD:BP783010.1,
INSD:AV553129.1,INSD:DR364773.1,INSD:EL134086.1,
INSD:DR364777.1,INSD:DR364780.1,INSD:BP578174.1,
INSD:EL171846.1,INSD:EH983914.1,INSD:ES204631.1,
INSD:EH856828.1,INSD:BP854717.1,INSD:DR364775.1,
INSD:ES126151.1,INSD:ES065351.1,INSD:EL022645.1,
INSD:EL201641.1,INSD:DR364772.1,INSD:EL097847.1,
INSD:BP562177.1,INSD:EG528972.1,INSD:EL316265.1,
INSD:EL331559.1,INSD:ES109843.1,INSD:EH927891.1,
INSD:ES106033.1,INSD:EG524994.1,INSD:EL265924.1,
INSD:EH832926.1,INSD:CD534989.1,INSD:EL281209.1,
INSD:BP660560.1,INSD:DR364774.1,INSD:EL219682.1,
INSD:EH919548.1,INSD:BP672027.1,INSD:ES166895.1,
INSD:EH934116.1,INSD:ES107430.1,INSD:BP785633.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY133869.1,INSD:AF370207.1,INSD:BX841547.1"
/note="winged-helix DNA-binding transcription factor
family protein; LOCATED IN: chloroplast; EXPRESSED IN: 25
plant structures; EXPRESSED DURING: 15 growth stages;
CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix
transcription repressor DNA-binding (InterPro:IPR011991),
RNA-binding protein Lupus La (InterPro:IPR006630); BEST
Arabidopsis thaliana protein match is: winged-helix
DNA-binding transcription factor family protein
(TAIR:AT5G66100.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink)."
/db_xref="TAIR:AT4G35890"
/db_xref="Araport:AT4G35890"
intron_pos 175:0 (1/5)
intron_pos 338:1 (2/5)
intron_pos 382:2 (3/5)
intron_pos 413:0 (4/5)
intron_pos 437:0 (5/5)
BEGIN
1 MASATSNNPA SSSMSPRRIS GNHGSPTASV AQSPRRPSRQ VSSPWTQIVR GESEPIAAAA
61 AVAGPSSPQS RAPIEPIASV SVAAPTAAVL TVEAAAGDEK SEASGGQDNA GKKPVWKRPS
121 NGASEVGPVM GASSWPALSE TTKAPSNKSS SDSLKSLGDV PSSSSASSSV PVTQGIANAS
181 VPAPKQAGRA NPNPTPNHSR QRSFKQRNGA SGSANGTVSQ PSAQGSFTEL PSHNPSPRGQ
241 NQKNGFASQN HGGTENPSQR DSYRNQNGNH HQSHGGRRNQ EHGNQNWTFQ RSFNGREGNA
301 QSQRGTPAFV RHPSPTVQPI PQFMAAQPFP SHIPFPTELA QSSYYPRMPY MTPIPHGPQF
361 FYHYQDPPLH MKLHKQIQYY FSDENLITDI YLRGFMNNEG FVPLRVVAGF KKVAELTDNI
421 QQIVEALQNS PHVEVQGDFI RKRDNWQNWV LRRNPTGSGP QSVDRADAVA KRLGNLSVDQ
481 SSADPIGGSS SQLQPTEALS DDQQQSSSTA PVSNHNAPDG ANR
//