LOCUS AEE86585.1 523 aa PRT PLN 23-MAR-2023 DEFINITION Arabidopsis thaliana winged-helix DNA-binding transcription factor family protein protein. ACCESSION CP002687-6668 PROTEIN_ID AEE86585.1 SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 18585056) AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G., Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N., Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M., Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R., Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M., Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M., Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W., Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L., Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J., Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I., Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U., Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M., Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C., Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J., Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S., Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A., Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D., Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S., Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O., Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S., Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F., Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T., Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A., Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D., Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P., Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W., Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M., Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E., Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M., Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G., Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A., Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N., Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M., Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S., Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K., Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C., Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D., Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A., Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N., Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M., Martienssen,R. and McCombie,W.R. TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 769-777 (1999) PUBMED 10617198 REFERENCE 2 (bases 1 to 18585056) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA REFERENCE 3 (bases 1 to 18585056) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter FEATURES Qualifiers source /organism="Arabidopsis thaliana" /mol_type="genomic DNA" /db_xref="taxon:3702" /chromosome="4" /ecotype="Columbia" protein /gene="LARP1c" /locus_tag="AT4G35890" /gene_synonym="AtLARP1c" /gene_synonym="La related protein 1c" /gene_synonym="T19K4.20" /inference="Similar to RNA sequence, EST:INSD:AV815758.1,INSD:AV805690.1,INSD:AV803653.1, INSD:AV809321.1,INSD:BP661506.1,INSD:BP606362.1, INSD:DR383724.1,INSD:ES078252.1,INSD:EH851331.1, INSD:EL118078.1,INSD:DR364771.1,INSD:EL270283.1, INSD:EL317648.1,INSD:BP789033.1,INSD:BP777376.1, INSD:EL322305.1,INSD:AV560172.1,INSD:DR364776.1, INSD:EH961491.1,INSD:ES201261.1,INSD:BE523947.1, INSD:EG528973.1,INSD:EH956567.1,INSD:EG480916.1, INSD:AV827411.1,INSD:AV802805.1,INSD:BP822483.1, INSD:DR364778.1,INSD:EG480915.1,INSD:AV552917.1, INSD:AV803877.1,INSD:AV831271.1,INSD:ES041800.1, INSD:EL117457.1,INSD:BP567427.1,INSD:Z26699.1, INSD:BP804859.1,INSD:EL228984.1,INSD:AV546949.1, INSD:DR364779.1,INSD:CB255507.1,INSD:EL152013.1, INSD:EL095795.1,INSD:ES101727.1,INSD:AV807901.1, INSD:EL215738.1,INSD:EL093588.1,INSD:CD532405.1, INSD:EH940868.1,INSD:EL993564.1,INSD:EL053163.1, INSD:EL088381.1,INSD:BX837288.1,INSD:AV548619.1, INSD:BP561439.2,INSD:CB253541.1,INSD:EL152826.1, INSD:AV553466.1,INSD:EH972994.1,INSD:BP783010.1, INSD:AV553129.1,INSD:DR364773.1,INSD:EL134086.1, INSD:DR364777.1,INSD:DR364780.1,INSD:BP578174.1, INSD:EL171846.1,INSD:EH983914.1,INSD:ES204631.1, INSD:EH856828.1,INSD:BP854717.1,INSD:DR364775.1, INSD:ES126151.1,INSD:ES065351.1,INSD:EL022645.1, INSD:EL201641.1,INSD:DR364772.1,INSD:EL097847.1, INSD:BP562177.1,INSD:EG528972.1,INSD:EL316265.1, INSD:EL331559.1,INSD:ES109843.1,INSD:EH927891.1, INSD:ES106033.1,INSD:EG524994.1,INSD:EL265924.1, INSD:EH832926.1,INSD:CD534989.1,INSD:EL281209.1, INSD:BP660560.1,INSD:DR364774.1,INSD:EL219682.1, INSD:EH919548.1,INSD:BP672027.1,INSD:ES166895.1, INSD:EH934116.1,INSD:ES107430.1,INSD:BP785633.1" /inference="Similar to RNA sequence, mRNA:INSD:AY133869.1,INSD:AF370207.1,INSD:BX841547.1" /note="winged-helix DNA-binding transcription factor family protein; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT5G66100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink)." /db_xref="TAIR:AT4G35890" /db_xref="Araport:AT4G35890" intron_pos 175:0 (1/5) intron_pos 338:1 (2/5) intron_pos 382:2 (3/5) intron_pos 413:0 (4/5) intron_pos 437:0 (5/5) BEGIN 1 MASATSNNPA SSSMSPRRIS GNHGSPTASV AQSPRRPSRQ VSSPWTQIVR GESEPIAAAA 61 AVAGPSSPQS RAPIEPIASV SVAAPTAAVL TVEAAAGDEK SEASGGQDNA GKKPVWKRPS 121 NGASEVGPVM GASSWPALSE TTKAPSNKSS SDSLKSLGDV PSSSSASSSV PVTQGIANAS 181 VPAPKQAGRA NPNPTPNHSR QRSFKQRNGA SGSANGTVSQ PSAQGSFTEL PSHNPSPRGQ 241 NQKNGFASQN HGGTENPSQR DSYRNQNGNH HQSHGGRRNQ EHGNQNWTFQ RSFNGREGNA 301 QSQRGTPAFV RHPSPTVQPI PQFMAAQPFP SHIPFPTELA QSSYYPRMPY MTPIPHGPQF 361 FYHYQDPPLH MKLHKQIQYY FSDENLITDI YLRGFMNNEG FVPLRVVAGF KKVAELTDNI 421 QQIVEALQNS PHVEVQGDFI RKRDNWQNWV LRRNPTGSGP QSVDRADAVA KRLGNLSVDQ 481 SSADPIGGSS SQLQPTEALS DDQQQSSSTA PVSNHNAPDG ANR //