LOCUS AEE86323.1 1108 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RING/U-box superfamily protein protein.
ACCESSION CP002687-6295
PROTEIN_ID AEE86323.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="CER9"
/locus_tag="AT4G34100"
/gene_synonym="ECERIFERUM 9"
/gene_synonym="F28A23.140"
/gene_synonym="F28A23_140"
/gene_synonym="SUD1"
/gene_synonym="SUPPRESSOR OF DRY2 DEFECTS 1"
/inference="Similar to RNA sequence,
EST:INSD:EH822086.1,INSD:BP798593.1,INSD:EL224014.1,
INSD:EL076663.1,INSD:EL275831.1,INSD:EG517513.1,
INSD:EL138020.1,INSD:AV522850.1,INSD:EH958636.1,
INSD:EL298162.1,INSD:EL220224.1,INSD:ES111737.1,
INSD:EH946410.1,INSD:EH985975.1,INSD:ES102643.1,
INSD:EL043489.1,INSD:CB185904.1,INSD:ES049669.1,
INSD:EL149869.1,INSD:EH949141.1,INSD:EG518174.1,
INSD:AV528384.1,INSD:BP647193.1,INSD:EL034229.1,
INSD:EL969874.1,INSD:EH941225.1,INSD:EG518173.1,
INSD:EL019816.1,INSD:EL311531.1,INSD:EG517512.1,
INSD:BP841106.1,INSD:EL027118.1,INSD:T41618.1,
INSD:EH957573.1,INSD:AV442398.1,INSD:BP823876.1,
INSD:ES105936.1,INSD:EL248966.1,INSD:BP655861.1,
INSD:EH951261.1,INSD:EL227317.1,INSD:EH882911.1,
INSD:EL143296.1,INSD:EL143913.1,INSD:EH956806.1,
INSD:AV441358.1,INSD:ES201789.1,INSD:BP650968.1,
INSD:EL986146.1,INSD:EH889695.1,INSD:EH949193.1,
INSD:BP830480.1,INSD:EL301039.1,INSD:AU239171.1,
INSD:BP813200.1,INSD:EH844949.1,INSD:EL006219.1,
INSD:EL240946.1,INSD:EH958238.1,INSD:EL123686.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AK118311.1,INSD:BX828852.1,INSD:AK230154.1"
/note="RING/U-box superfamily protein; FUNCTIONS IN: zinc
ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 15 growth stages;
CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type
(InterPro:IPR018957), Zinc finger, RING-CH-type
(InterPro:IPR011016); BEST Arabidopsis thaliana protein
match is: RING/FYVE/PHD zinc finger superfamily protein
(TAIR:AT4G32670.1); Has 2169 Blast hits to 1906 proteins
in 224 species: Archae - 0; Bacteria - 0; Metazoa - 966;
Fungi - 273; Plants - 550; Viruses - 44; Other Eukaryotes
- 336 (source: NCBI BLink)."
/db_xref="TAIR:AT4G34100"
/db_xref="Araport:AT4G34100"
intron_pos 113:0 (1/8)
intron_pos 341:0 (2/8)
intron_pos 595:0 (3/8)
intron_pos 665:2 (4/8)
intron_pos 788:2 (5/8)
intron_pos 842:1 (6/8)
intron_pos 897:0 (7/8)
intron_pos 946:0 (8/8)
BEGIN
1 MEISPADSLS ISGAAASEVV SEPSVSSSSS SSSPNQASPN PFSNMDPAVS TATGSRYVDD
61 DEDEEDVCRI CRNPGDADNP LRYPCACSGS IKFVHQDCLL QWLNHSNARQ CEVCKHPFSF
121 SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR
181 TFGEAQRLFL SHISTTVILT DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD
241 DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
301 AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG
361 RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA LTAVSNLTSE GQGNGLLGQL
421 TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA
481 LIRYAKGEPL TVGRFYGIAS IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC
541 GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
601 LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF
661 PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL LRCWFTGVGW ALGLTDFLLP
721 RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED
781 DDEQSDSDRY NFVVRIILLL LVAWVTLLLF NSALIVVPVS LGRALFSAIP ILPITHGIKC
841 NDLYAFVIGT YAFWTTISGA RYAIEHVKSK RTSVLLNQIW KWCGIVFKSS VLLAIWVFII
901 PVLIGLLFEL LVIVPMRVPV DESPVFLLYQ DWALGLIFLK IWTRLVMLDH MLPIVDDSWR
961 AKFERVREDG FSRLQGLWVL REIVFPIVMK LLTALCVPYV LARGVFPMLG YPLVVNSAVY
1021 RFAWIGCLSV SLFCFCAKRC HVWFRNLHNS IRDDRYLIGR RLHNFGEAAL ANQNQNQSSE
1081 DAGDGVLIGR EGDVDNGLRL RRAIQQEA
//