LOCUS AEE86109.1 433 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana La protein 1 protein.
ACCESSION CP002687-6005
PROTEIN_ID AEE86109.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="La1"
/locus_tag="AT4G32720"
/gene_synonym="AtLa1"
/gene_synonym="F4D11.80"
/gene_synonym="F4D11_80"
/gene_synonym="La protein 1"
/inference="Similar to RNA sequence,
EST:INSD:F15295.1,INSD:BP779011.1,INSD:AV794970.1,
INSD:BP777795.1,INSD:BP794793.1,INSD:BP567528.1,
INSD:EL336330.1,INSD:DR252587.1,INSD:EL122978.1,
INSD:ES050201.1,INSD:AV826446.1,INSD:DR252573.1,
INSD:EG423644.1,INSD:BP583978.1,INSD:DR252580.1,
INSD:DR252574.1,INSD:F15294.1,INSD:BP594373.1,
INSD:EL193588.1,INSD:EH925418.1,INSD:DR252577.1,
INSD:ES124588.1,INSD:BP645118.1,INSD:AV543053.1,
INSD:AV519909.1,INSD:BP591125.1,INSD:AV820387.1,
INSD:DR252591.1,INSD:EL970817.1,INSD:EL150728.1,
INSD:BP584258.1,INSD:DR252589.1,INSD:EL276338.1,
INSD:ES042293.1,INSD:EL263241.1,INSD:DR252588.1,
INSD:ES065700.1,INSD:EL025852.1,INSD:AV538041.1,
INSD:BP791694.1,INSD:DR252592.1,INSD:DR252581.1,
INSD:AV832277.1,INSD:AV550185.1,INSD:DR252576.1,
INSD:ES004561.1,INSD:BP829570.1,INSD:DR252578.1,
INSD:BP671691.1,INSD:BP830643.1,INSD:N96627.1,
INSD:BP580492.1,INSD:BP652859.1,INSD:EH939076.1,
INSD:DR252579.1,INSD:DR252594.1,INSD:ES027258.1,
INSD:DR252582.1,INSD:DR252584.1,INSD:AV832283.1,
INSD:BP564675.1,INSD:DR252585.1,INSD:ES160024.1,
INSD:DR252590.1,INSD:AV789314.1,INSD:ES152020.1,
INSD:EG423643.1,INSD:ES158751.1,INSD:DR252575.1,
INSD:DR252593.1,INSD:DR252583.1,INSD:BP563804.1,
INSD:DR252586.1,INSD:DR381143.1,INSD:EH964058.1,
INSD:BP806850.1,INSD:AV820325.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX827662.1,INSD:BX827316.1,INSD:BT000396.1,
INSD:AY136302.1,INSD:AY056237.1,INSD:BX827329.1"
/note="La protein 1 (La1); FUNCTIONS IN: RNA binding;
INVOLVED IN: embryo development, ribosome biogenesis;
LOCATED IN: nucleoplasm, cell wall; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Winged helix-turn-helix transcription
repressor DNA-binding (InterPro:IPR011991), RNA-binding
protein Lupus La (InterPro:IPR006630), Lupus La protein
(InterPro:IPR002344), RNA recognition motif, RNP-1
(InterPro:IPR000504), Nucleotide-binding, alpha-beta plait
(InterPro:IPR012677), RNA-binding motif
(InterPro:IPR014886); BEST Arabidopsis thaliana protein
match is: RNA recognition motif (RRM)-containing protein
(TAIR:AT1G79880.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink)."
/db_xref="TAIR:AT4G32720"
/db_xref="Araport:AT4G32720"
intron_pos 18:0 (1/9)
intron_pos 44:1 (2/9)
intron_pos 94:1 (3/9)
intron_pos 142:0 (4/9)
intron_pos 191:2 (5/9)
intron_pos 232:2 (6/9)
intron_pos 331:0 (7/9)
intron_pos 380:1 (8/9)
intron_pos 404:2 (9/9)
BEGIN
1 MSIPCLTEET AKTVLRQVEF YFSDSNLPID DFLKKTVTES EDGLVSLALI CSFSKMRGYL
61 KLGDSKGDDI PEDTIKAVAD TLRTSSALKI SDDGKKVGRS TELLKLEDLI EQLNARTVAA
121 SPFSYDVKRE DVESFFSQYG KVNSVRMPRH VAESRIFSGV ALVEFPTEED AQNVMKQNLV
181 FAGQELELKP KKEFDNEREK DEVKFANYQP QKGSANQKNG SDHKNNSAYE PDYPKGLIIS
241 FTLKRSAEEG TTEQKSSEEP TDKTMEESET KPADTPDADK ENTGEVQAEG AEDEDDEKEE
301 KGALATHKDN KDVVLREDLK AVFGKFGDVK FVDFKMGSET GYLRFDEPEA SQKARAAAVL
361 ANEGGLAVKN FIAVLEPVIG EAEKEYWTLL RSKDRFDKGG RGGRGGRRGG RFGRKRGSDS
421 PGGRWNKSQK VEA
//